Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16595 194 2e-44 seq5800 165 9e-36 seq14764 161 1e-34 >seq16595 Length=7721 Score = 194 bits (214), Expect = 2e-44 Identities = 182/230 (79%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| | || || ||||| ||||| | ||||| ||| || Sbjct 1729 AATGCAGATATTTGTCAAGACATTGACTGGGAAGACCATTACCTTGGAGGTGGAG--AGC 1786 Query 27465 T--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||||| ||| | ||| | || |||||||| |||||||| ||||| |||||| Sbjct 1787 TCAGATACCATTGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGGATTCCCCCAGAC 1846 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||| | ||||||||||||||||| || ||||||| |||||| | || || ||| Sbjct 1847 CAGCAGCGTTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCTTGGCTGATTAT 1906 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||||| || |||||||| || ||| | ||||| || ||||| Sbjct 1907 AACATCCAAAAGGAGTCTACTCTTCACCTTGTCCTTCGTCTCCGTGGTGG 1956 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || ||||| ||||| || |||||||| ||||| ||| | Sbjct 453 ATGCAAATCTTCGTGAAAACCCTTACTGGCAAAACCATTACTCTCGAGGTCGAGAGTTCT 512 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || | || || || |||||||| |||||||| ||||| ||| Sbjct 513 GACACCATTGACAACGTCAAAACCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAG 572 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 || ||| | || || ||||| || ||||| || || Sbjct 573 CAACGTTTGATCTTCGCTGGAAAACAACTTGAAGA 607 >seq5800 Length=18681 Score = 165 bits (182), Expect = 9e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||||||||| |||||||| || |||||||| || || ||||| ||||| ||| Sbjct 1730 TAAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAG-- 1787 Query 27462 AGGT--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 || | |||| ||||| || | ||| |||| || || |||||||| || ||||| ||| Sbjct 1788 AGTTCCGATACCATTGACAACGTTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCA 1847 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 ||||| |||||| | || || ||||| || || || ||||||| || ||||| || ||| Sbjct 1848 GACCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGAC 1907 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||| |||| || ||||| || || || || || | ||||| | |||||| Sbjct 1908 TACAATATCCAGAAAGAATCAACACTCCACCTTGTACTCCGTCTCAGAGGTGGA 1961 Score = 123 bits (136), Expect = 3e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| |||| |||| |||||||| |||||||| ||||| ||||| |||||| | || || Sbjct 3402 AATGTGAAAACTAAGATTCAGGATAAGGAGGGTATTCCGCCAGATCAGCAGAGACTTATC 3461 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || || ||||| || |||| | || || || ||||| || | || ||||| Sbjct 3462 TTTGCCGGGAAACAACTTGAAGATGGAAGGACACTTGCTGACTACAACATTCAGAAGGAG 3521 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||||||||| ||| | |||||||| |||||| Sbjct 3522 TCTACTCTTCATCTTGTCCTTCGTCTTCGTGGTGGA 3557 >seq14764 Length=84029 Score = 161 bits (178), Expect = 1e-34 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || | ||||||||| || | Sbjct 1948 ATGCAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAG--AGCT 1891 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||||| || ||||| | ||||| || |||||||| || || || || |||| Sbjct 1890 CGGACACCATTGACAACGTGAAGACGAAAATCCAAGACAAGGAAGGGATCCCCCCTGACC 1831 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | ||||||||||||||||| || || |||| |||||| | || || || | Sbjct 1830 AGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACA 1771 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||| ||||| ||||| ||||| || ||| | |||||||| |||||| Sbjct 1770 ATATCCAGAAGGAGTCCACCCTTCACCTTGTCCTTCGTCTTCGTGGTGGA 1721 Score = 156 bits (172), Expect = 5e-33 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||||||||| | ||||||||| || | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAG--AGTT 2119 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||||| ||| | || | || ||||||||||||||||||||||| ||||| | Sbjct 2118 CAGACACCATTGATAATGTTAAAACAAAGATTCAGGACAAGGAGGGAATTCCCCCAGATC 2059 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | || ||||| || || || || || |||| ||||| || || || || | Sbjct 2058 AGCAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACA 1999 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| ||||| |||||| | || | || || || ||||| Sbjct 1998 ACATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCGCCTGCGTGGTGG 1950 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || |||||||| ||||| || ||||| || || ||| || | Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAG--AGTT 2923 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | || | || | || || || ||||| || |||||||| ||||| | Sbjct 2922 CAGACACCATAGACAACGTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATC 2863 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| ||| | || || || || |||||||| || |||| ||||| || || ||||| | Sbjct 2862 AGCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACA 2803 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| || || ||||| || || || | ||| | | ||||| Sbjct 2802 ACATTCAAAAAGAGTCAACTCTCCACCTTGTTCTCCGTTTAAGAGGTGG 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569473897220800