Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5726 123 2e-23 seq14764 120 2e-22 seq16595 118 7e-22 seq5800 89.7 3e-13 >seq5726 Length=29179 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | ||||||||| ||||| ||||| || ||||| ||||| | Sbjct 26685 CCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCG 26744 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||| ||||| || || | ||| |||||||| || || Sbjct 26745 AGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGA 26804 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| |||| || || || || | || ||||| | || || Sbjct 26805 ATTCCTTCCTTGTCTTGGATC-TTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAAC 26863 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | |||||| ||||| || |||| |||||||| || |||||||| ||| Sbjct 26864 CTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTTG 26915 >seq14764 Length=84029 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || ||| |||||| || ||||| ||||| | ||| || || | |||||| Sbjct 1968 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCA 2027 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| || ||||| || || | ||| || || || || | |||||||||||| || Sbjct 2028 AGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTC-CTG 2086 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||||||||| || ||| |||||| ||||| || |||| ||| || || || Sbjct 2087 AATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTT 2146 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || ||||| Sbjct 2147 TCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | |||||||| ||| ||||||||||| || || | | Sbjct 2754 CCACCTCTTAAACGGAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCA 2813 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||| || || || || || ||||| || || || || || Sbjct 2814 AGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGA 2873 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| |||| || ||||| ||| | || |||||| ||||| || Sbjct 2874 ATTCCTTCTTTGTCTTGGATC-TTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGAC 2932 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || |||||||| | |||||||| || || ||||| Sbjct 2933 TTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 >seq16595 Length=7721 Score = 118 bits (130), Expect = 7e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || ||||| ||||||||| ||||||||||| | | || || | || ||||| || Sbjct 1932 TGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCCTCAAGCTGC 1873 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| ||||| || |||||||| ||||| || || | |||||||| || ||| || Sbjct 1872 TTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATC-CTGAATCTT 1814 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || ||||| || ||| || ||| ||||||||| |||| ||| || || || || || Sbjct 1813 GGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGT 1754 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| |||||||| Sbjct 1753 CAATGTCTTGACAAATATCTGCAT 1730 Score = 89.7 bits (98), Expect = 3e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 34550 CGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCT 34609 |||||||||||||||| || || || || ||||| || || || || || | ||| |||| Sbjct 609 CGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCCT 550 Query 34610 TGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 ||||| |||| || ||||| ||| | ||| ||||| ||||| || || | || Sbjct 549 TGTCTTGGATC-TTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | |||||||| || || ||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq5800 Length=18681 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | ||||| || || || || || || || || | | Sbjct 1960 CCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCA 1901 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || ||||| || || || || |||||||||||||| || || Sbjct 1900 AGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGA 1841 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || || |||||| | ||| || || ||||| || Sbjct 1840 ATCCCTTCCTTGTCTTGGATC-TTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGAC 1782 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||||| ||||| ||||| | || || || || || ||||| || Sbjct 1781 CTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTT 1731 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| ||||| |||||| |||||||| || || | | Sbjct 3556 CCACCACGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 3497 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | | |||||||||||||| |||||||| || | | ||| || || ||||| Sbjct 3496 AGTGTCCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGCGGA 3437 Query 34600 ACTCCCTCCTTGTC 34613 | |||||||| || Sbjct 3436 ATACCCTCCTTATC 3423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314279511100220