Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14764 122 8e-23 seq5726 113 4e-20 seq5800 86.0 5e-12 >seq14764 Length=84029 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || ||||| ||| | || ||||| ||||| || || Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCA 2921 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || |||||||||||||| || ||||| ||||| Sbjct 2920 GACACCATAGACAACGTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAG 2861 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||| | ||||| | || || |||| |||||| Sbjct 2860 CAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACAAC 2801 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| ||||| || | || | ||| | ||||| | ||||| Sbjct 2800 ATTCAAAAAGAGTCAACTCTCCACCTTGTTCTCCGTTTAAGAGGTGG 2754 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || ||| ||||||| | || || || || Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| ||||| ||||| || || || || || ||||| Sbjct 2116 GACACCATTGATAATGTTAAAACAAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 2057 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || ||||| | ||||| | || || | ||||||||| Sbjct 2056 CAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACAAC 1997 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | || |||| ||||| || Sbjct 1996 ATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCGCCTGCGTGGTGGTAT 1947 >seq5726 Length=29179 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || || || || || ||| | || Sbjct 26911 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCCTCT 26852 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 26851 GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAA 26792 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||| | ||||| | || | | ||||||||| Sbjct 26791 CAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTACAAC 26732 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| ||||| | |||||||| | || ||| | ||||| Sbjct 26731 ATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq5800 Length=18681 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| |||||||| | || ||||| || || || ||| Sbjct 1734 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAGTTCC 1793 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| ||||| || || || || ||| Sbjct 1794 GATACCATTGACAACGTTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCAA 1853 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || ||||| | || || | ||| || |||| ||||| Sbjct 1854 CAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACTACAAT 1913 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || || || || Sbjct 1914 ATCCAGAAAGAATCAAC 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434280483436800