Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq104384 176 6e-39 seq20461 86.0 8e-12 seq2764 82.4 1e-10 >seq104384 Length=481 Score = 176 bits (194), Expect = 6e-39 Identities = 221/298 (74%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 184289 GTTGGTGGTAAGATTGCTAATGCT-CCTTTTGTACTAGGTACAGCAGACTTTATGATACA 184347 || ||||| || ||||| || | ||| || | |||| || || || ||| || |||| Sbjct 186 GTGGGTGGCAAAGTTGCTT-TGTTACCTATTCCATTAGGAACCGCGGATTTTTTGGTACA 244 Query 184348 TCACATACACGCTTTCCAGATTCATGTTTGTGTATTAATTCTTCTCAAGGGTGTTTTATA 184407 |||||| || || || ||||||||| ||||| || || || || || ||| ||| Sbjct 245 TCACATTCATGCATTTACGATTCATGTGACGGTATTGATACTCCTGAAAGGCGTTCTATT 304 Query 184408 CTCTAGAAACTCACAATTAATACCAGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTG 184466 || | | ||||| || ||||| ||||| || || | | || || | |||||||||| Sbjct 305 TGCTCGTAGCTCACGTTTGATACCGGATAA-AGCAAATCTTGGGTTTCGTTTCCCTTGTG 363 Query 184467 ATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGGTT 184526 |||||||||| ||||| || || ||||| ||||| | ||||||||||| ||| | || Sbjct 364 ATGGTCCTGGAAGAGGGGGGACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAGGAC 423 Query 184527 TATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATGCA 184584 ||||||||||||| ||| || || |||||||| ||||| || ||||||| |||||| Sbjct 424 TATTCTGGATGTACAATGCAATTTCGATAGTAATATTCCATTTCAGTTGGAAAATGCA 481 >seq20461 Length=2509 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 188669 TAATACCCTCAGAGAGATATAGAGGGAGGATACACTATGAGTTTGATAAATGTATTGCTT 188728 |||| | |||||| | | | | || | || || | ||| ||||||||||||||||||| Sbjct 347 TAATCACATCAGAGCGTTTTCGTGGTCGAATCCATTTTGAATTTGATAAATGTATTGCTT 288 Query 188729 GTGAAGTATGTGTAAGAGTTTGTCCTATTAATTTACCTGTAGTTGATTGG 188778 ||||||| ||||| | || |||||||| || | ||||| ||||||||| Sbjct 287 GTGAAGTGTGTGTTCGCGTATGTCCTATAGATCTGCCTGTTGTTGATTGG 238 >seq2764 Length=130360 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 136389 GGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGGAAAAGATTGGCTAGTATTGGA 136448 || || |||||| |||||||||||| |||||||||||| || ||||| ||||| Sbjct 72709 GGTATCCTTGCTATTGATGAATCTAATGCTACTTGTGGGAAGAGGTTGGCATCCATTGGC 72650 Query 136449 GTAGAAAATACAGAGGCAAATAGACAGGCATACAG--AGGTATGTTATTTACCACAGAGG 136506 |||| || ||||| || ||| | ||||||||||| || | | || |||| || | Sbjct 72649 CTAGATAACACAGAAGCCAATCGCCAGGCATACAGGCAGCT-TCTT-CTTACAACTCCTG 72592 Query 136507 GATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGAAACACT 136552 | | ||| | |||||| |||||||| | ||||| || ||||| Sbjct 72591 GCCTGGGTGAGTATATTTCCGGTGCTATTCTTTTTGAGGAGACACT 72546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630501054154400