Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6046 87.8 2e-12 >seq6046 Length=110076 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 6612 CCAC-GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 |||| ||||||||| |||||| | || | ||||| ||| ||||| || || || ||| Sbjct 46213 CCACAGACATGAGCAATCATGCATGTCAAGAGAGCATAAGACGCAATATTAAAAGGAACC 46272 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACG 6730 ||||||||||||||| | || || || || | || ||||| | ||| ||||| || || Sbjct 46273 CCTAACCCCATGTCTGCTGAACGCTGGTACATTTGACAGGATAACTCGCCATTTGCTACA 46332 Query 6731 TAGAATTG 6738 ||||| || Sbjct 46333 TAGAACTG 46340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || ||||| || || ||||| ||| | ||||| || | || || || || | ||||||| Sbjct 46340 CAGTTCTATGTAGCAAATGGCGAGTTATCCTGTCAAATGTACCAGCGTTCAGCAGACATG 46281 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 ||||||||||| || || || ||||| ||| ||||| | || | |||||| |||||| Sbjct 46280 GGGTTAGGGGTTCCTTTTAATATTGCGTCTTATGCTCTCTTGACATGCATGATTGCTCAT 46221 Query 34727 GTC-GTGG 34733 ||| |||| Sbjct 46220 GTCTGTGG 46213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447604911124800