Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq14764 82.4 5e-11 >seq14764 Length=84029 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||||| ||||| || |||||| | || || || || | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| | | ||||||| | | || ||||| || || |||| || Sbjct 2116 GACACCATTGATAAT-GTTAAAACAAAGATTCAG--GACAAGGAGGGAATTCCCCCAGAT 2060 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| |||| || ||||| |||||||| | || || | || | |||| | ||||| Sbjct 2059 CAGCAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTG-CTGATTA 2001 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| ||| | ||||||||| | || ||||||| || Sbjct 2000 CAACATCCAGAAGGAGTCCACACTTCATTTGGTTCTTCGCCTGCGTGGTGG 1950 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||| |||| || || || || ||||| | || || | || | ||| | ||| Sbjct 2290 GATCAGCAAAGGTTGATCTTCGCTGGCAAACAGCTTGAAGATGGCCGTACTTTGGCTGAT 2231 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||||| ||| | ||||||||| | ||| ||||||| || Sbjct 2230 TACAACATCCAAAAGGAGAGTACTCTTCATTTGGTTCTCCGTCTGCGTGGTGG 2178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355353487854180