Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14764 192 1e-43 seq5800 170 4e-37 seq5726 165 2e-35 seq16595 159 8e-34 seq7108 86.0 1e-11 >seq14764 Length=84029 Score = 192 bits (212), Expect = 1e-43 Identities = 178/223 (80%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||| |||||||| || ||||| || ||||| || | || Sbjct 1727 ACGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGT 1786 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || || || || | | || |||||||| || | || Sbjct 1787 ACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCC 1846 Query 211013 TTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||| ||||| ||| || |||||||| || |||||||| ||||| |||||||| | Sbjct 1847 TTCCTTGTCTTGGAT-TTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCA 1905 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| ||||||||||| || || | |||||| Sbjct 1906 AGGTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| ||||||||||| ||||| || || ||||| || | |||||| Sbjct 2769 AGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCT 2828 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| ||||||||||| | ||||| || || || |||| |||||| ||||| Sbjct 2829 TCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 2888 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| || |||||||| || || || || ||||||||||| ||| Sbjct 2889 TGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTC 2948 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || | ||||| Sbjct 2949 TTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| |||||||| || |||||||| ||||| ||||| || | |||||||| ||||| Sbjct 1974 TGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCAAGCTGT 2033 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| ||||| | | || || || || |||| ||| ||||||||||| |||||| Sbjct 2034 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 2093 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || || |||||||| || || |||||||| | || || |||||||| ||| Sbjct 2094 GTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTTCCAGTG 2153 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | ||||| Sbjct 2154 AGAGTCTTGACGAAGATTTGCAT 2176 >seq5800 Length=18681 Score = 170 bits (188), Expect = 4e-37 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || || ||||| ||||| || || || |||||||| | ||||| Sbjct 1945 AGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCC 1886 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || |||||||| | || |||||||| || |||| ||||||||||| Sbjct 1885 TCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCT 1826 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||| || || || || ||||||||||| || || Sbjct 1825 TGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTT 1766 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 || || ||||||||||| || || | |||||||||| Sbjct 1765 TTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTTAT 1729 Score = 123 bits (136), Expect = 6e-23 Identities = 131/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 210880 AGCTAATATTTCA--ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTT 210937 |||| | ||| || |||||| | |||||||| |||||||| ||||| || || ||||| Sbjct 3566 AGCTTAAATTCCACCACGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTT 3507 Query 210938 ATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTG 210997 || || ||||| |||||||||||||| || || || || || |||||||| | || || Sbjct 3506 GTAGTCAGCAAGTGTCCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTG 3447 Query 210998 GTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || |||| || ||||| ||||| ||||| |||||| || || ||| Sbjct 3446 ATCTGGCGGAATACCCTCCTTATCCTGAATCTTAGTTTTCACATTATCTATG 3395 >seq5726 Length=29179 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || || |||||||| ||||| || || || | |||||||| || || Sbjct 26709 TGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCTTCAAGTTGT 26768 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || || ||||||||||| || |||| |||||||||||| |||||||| Sbjct 26769 TTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTG 26828 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||||||||||||| ||||||||| || || || || || || || Sbjct 26829 GTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCTGTT 26888 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || | ||||||||| Sbjct 26889 AGGGTTTTCACGAAGATCTGCATTTT 26914 >seq16595 Length=7721 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||||||||| ||||| ||||||||||||||||| || | ||| | |||||| Sbjct 1941 AGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCC 1882 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || || || | || || ||||| || |||| || ||||| ||| Sbjct 1881 TCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCC 1822 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || ||||| || ||||| || ||||| | || || ||| Sbjct 1821 TGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTC 1762 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | ||||||| Sbjct 1761 TTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || || || || |||||||| | ||||| || || || |||| ||||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||| ||||| || ||||||||||| || || ||||||||||| Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || || | ||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq7108 Length=60128 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| |||||||| ||| || || ||||| ||||| |||||||||||| Sbjct 5103 CCTTCCTTGTCTTGGATCTTAGTTTTGACATTGTCGATTGTGTCGCTGCTTTCAACCTCA 5162 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| || || || || || || || | |||||| || Sbjct 5163 AGGGTGATAGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCATCTT 5209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157409309149100