Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5726 122 6e-23 seq14764 116 2e-21 seq5800 98.7 7e-16 >seq5726 Length=29179 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || ||||| || || || || ||||| ||| Sbjct 26914 AAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAATCC 26855 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || || || | | ||||| ||||| | || ||||| Sbjct 26854 TCTGACACCATCGACAATGTCAAGACCAAGA-TCCAAGACAAGGAAGGAATTCCACCAGA 26796 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||| | || || ||||| |||||||| ||||| | || ||| | | ||||| Sbjct 26795 CCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGATTA 26736 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| || || || || || | ||||| || | | ||| |||| || Sbjct 26735 CAACATCCAGAAGGAATCGACTCTTCATTTGGTGCTTCGATTGAGAGGTGG 26685 >seq14764 Length=84029 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || ||||| ||||| || || || | || ||||| | Sbjct 2176 ATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCA 2117 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||||||||| | || ||||| || || | || |||||||| Sbjct 2116 GACACCATTGATAATGTTAAAACAAAGA-TTCAGGACAAGGAGGGAATTCCCCCAGATCA 2058 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| || ||||| | || ||| | | |||||||| Sbjct 2057 GCAGAGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACAA 1998 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||||||| | ||||| ||| Sbjct 1997 CATCCAGAAGGAGTCCACACTTCATTTGGTT 1967 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || || || || |||||||||||||| || | Sbjct 2980 ATGCAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCA 2921 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | ||||| || | | ||||||||||| | || |||||||| Sbjct 2920 GACACCATAGACAACGTCAAAACCAAGA-TCCAAGACAAAGAAGGAATTCCACCAGATCA 2862 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || || || || ||||| ||||| | || ||| | | ||| ||||| Sbjct 2861 GCAACGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACAA 2802 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| || Sbjct 2801 CATTCAAAAAGAGTCAAC 2784 >seq5800 Length=18681 Score = 98.7 bits (108), Expect = 7e-16 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||||||||| || ||||| || || ||||| || ||||| || |||||||| || || Sbjct 1730 TAAAATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGAGAG 1789 Query 23667 CACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | || || |||| || |||| || || | | ||||| ||||| | || |||| Sbjct 1790 TTCCGATACCATTGACAACGTTAAGACTAAGA-TCCAAGACAAGGAAGGGATTCCCCCAG 1848 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 | ||||||||||| || || || || ||||| || || || | ||||| | | ||| | Sbjct 1849 ACCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGACT 1908 Query 23786 ACAACATACAAAAAGAGTCCACA 23808 |||| || || ||||| || ||| Sbjct 1909 ACAATATCCAGAAAGAATCAACA 1931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337526218808720