Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq14764 161 2e-34 seq5800 161 2e-34 seq5726 150 4e-31 seq16595 136 9e-27 >seq14764 Length=84029 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| || ||||| || || |||| ||||||||| |||||||| Sbjct 1727 ACGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGT 1786 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| || || | | || ||||| || || || || Sbjct 1787 ACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCC 1846 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || |||||| || |||||||| ||| | || || || || Sbjct 1847 TTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAA 1906 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| || | ||| | ||||| Sbjct 1907 GGTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || |||||||| | ||||| ||||| | ||| | |||||| Sbjct 2769 AGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCT 2828 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| ||||| || |||||||| | ||||| || || || ||||| ||||| |||||| Sbjct 2829 TCTAGTTGCTTTCCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 2888 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || ||||||||||| | || || || | ||||| ||| Sbjct 2889 TGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTC 2948 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||||| | ||| | |||||| Sbjct 2949 TTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||| || || |||| |||||||| || | ||| | |||||||| ||||| Sbjct 1974 TGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCTTCAAGCTGT 2033 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | | || || || || ||||| || |||||||| || |||||| Sbjct 2034 TTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTT 2093 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| || ||||||||||| | || || || || || || ||||| || || Sbjct 2094 GTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTCTTTCCAGTG 2153 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | |||||| Sbjct 2154 AGAGTCTTGACGAAGATTTGCAT 2176 >seq5800 Length=18681 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| || |||||||| |||| |||||| ||||| | || | ||||| Sbjct 1945 AGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCC 1886 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||||||| |||||||||||||| | || |||||||| || ||||| |||||||||||| Sbjct 1885 TCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCT 1826 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || ||||| || || | || || || | || || || Sbjct 1825 TGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTT 1766 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTAT 225718 ||||| || | ||| || | ||| | ||||||||||| Sbjct 1765 TTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTTAT 1729 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||| || ||||| || || || || | ||||| || || | || Sbjct 3551 ACGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGT 3492 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || ||||| || |||||||||| || || || ||||||||||| Sbjct 3491 CCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGCGGAATACC 3432 Query 225612 TTCCTTGTCTTGGATCTT 225629 ||||| || || ||||| Sbjct 3431 CTCCTTATCCTGAATCTT 3414 >seq5726 Length=29179 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| || |||| |||||||| || | ||| | |||||||| || || Sbjct 26709 TGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCTTCAAGTTGT 26768 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || || ||||||||||| || ||||| |||||||||||||||||||| Sbjct 26769 TTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTG 26828 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||||||||| |||| ||| || |||| || || || || || || Sbjct 26829 GTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCTGTT 26888 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| | ||| | |||||||| Sbjct 26889 AGGGTTTTCACGAAGATCTGCATTTT 26914 >seq16595 Length=7721 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| ||||| || || ||||||| || ||||| ||||| || | ||||| Sbjct 1941 AGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCC 1882 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || | || || ||||| || ||||| || ||||| || Sbjct 1881 TCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCC 1822 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||| |||||| | ||||| || || || || ||| Sbjct 1821 TGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTC 1762 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | || | |||||| Sbjct 1761 TTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| || || || ||||||||||| | ||||| || || || ||||| |||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| || || || |||||||| || | || || || | || Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || | ||||| | ||| | |||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190738326233960