Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7113 205 8e-48 >seq7113 Length=4078 Score = 205 bits (226), Expect = 8e-48 Identities = 593/894 (66%), Gaps = 31/894 (3%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||| || || |||| ||| || |||||||| ||||| |||| ||| ||||| Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 4316 TTCCATAA-AATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAA 4374 |||||| ||||||| ||||| | | ||| ||| ||||| || || | | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 4375 GCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 ||||| ||||| |||||||| || || || ||||| | || ||||| || || | || Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | || || || || || || | || || ||| || || || ||| | | Sbjct 727 AAGCGACTGGCAGTGC--ATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCAC 670 Query 4493 TATATCTTTTATTTTATCTTTAG-ATGGTTTATTTACT-AAGTATCCAAACAATAAACAC 4550 || ||| || || |||| | | | ||| | | | ||| | | | |||||| Sbjct 669 GATCCCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAG--TAAACAA 612 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || ||||| ||||| | ||||| |||| || | |||||| || || ||||||||| Sbjct 611 GCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCCG 552 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAGAATA 4668 |||||||| || | ||||||||||| || || ||| | || | || || ||||| | Sbjct 551 GGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACTT--CCGGAGAAGAAAA 494 Query 4669 TGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAA 4728 | ||||| || || || || | ||||| | ||| || | Sbjct 493 TCCCTTCAACACAAGCGAAAGCAATTAATCTTTCAN------ATTCGGCACCATCG---A 443 Query 4729 TCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA 4788 ||||| |||| ||||||| ||||| ||||| || || || ||||| | || || | Sbjct 442 TCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGA 383 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 ||||| |||||| || | ||||| || || || |||| || || |||||||| Sbjct 382 ATAATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTT 323 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACT 4907 | ||||| || ||||| || || || || || |||||||| ||| | ||||| | ||| Sbjct 322 CGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCA-CGGGCTTCAGAGACT 264 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTATACCGTCACTGGCTGC 4966 |||| || || || | | || ||| ||||| || ||||| ||| || || Sbjct 263 TGAATCTCTTTCATGAAACGAT-TAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGC 205 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG--GCTTAAGTTTTTTCC-A 5023 ||| || || | ||| || | || || | ||||| || | | | ||| | | ||| | Sbjct 204 AAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCA 145 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 ||| | | ||||| | | |||||||||||| | ||||| || |||||||| ||||| Sbjct 144 ATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTT 85 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGT 5136 |||||||| ||| || | ||| || |||||||||| || ||| ||||||| Sbjct 84 CTTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACAT-ACAGAATCTGT 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426438884374220