Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7113 237 2e-57 seq14392 105 9e-18 >seq7113 Length=4078 Score = 237 bits (262), Expect = 2e-57 Identities = 600/906 (66%), Gaps = 34/906 (4%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||||||| || || || | ||||| || ||||| ||||| |||| ||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 47909 TTCCATAA-AATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAA 47967 |||||| ||||||| ||||| | || ||||| ||| | | |||| | | | | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027 || |||||| ||||| ||||| || ||| |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087 ||||| || || || | || || |||||| || ||||| || Sbjct 727 AAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCT----TTC 672 Query 48088 TCGATGTTACCGTT---TCCTCACTTGGTGGA-----TACAACAAATGTTTAAACATTAA 48139 |||| || || || || ||||| | | | || | | | | | ||| Sbjct 671 ACGAT----CCCTTGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAA 616 Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| |||||||| |||||||||| ||||||||||| || ||||| | Sbjct 615 ACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAA 556 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 |||||||||| || |||||||| ||||| || || | |||| ||| || ||||| Sbjct 555 TCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACTTCCGGAGAAGAA 496 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC---TCCGTAACTGGCTTCGTTGTG 48316 || ||||| || || || || | | ||| || | || || | ||| Sbjct 495 AATCCCTTCAACACAAGCGAAAGCAATTAATCTTTCANATTCGGCAC---CATCG----- 444 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | | ||||| || || ||||||||||||||||| |||||||| || ||| Sbjct 443 -ATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACG 385 Query 48377 AAAGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 || | | || |||||| | ||||| | ||| || |||| | ||| ||||| Sbjct 384 GAATA-ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACA 326 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 ||||||| || || |||||||| || || || || |||||||| | ||||| | || Sbjct 325 TTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGA 266 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || | ||| | || || | ||| | ||| ||| || || |||||| ||||| Sbjct 265 CTTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAG 206 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCC 48612 |||| || || | || || |||| |||| || ||| | |||||| | | | | || Sbjct 205 CAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCC 146 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 | | | ||||| ||| | ||| |||||||| || ||||| || || || || |||| Sbjct 145 AATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTT 86 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGAT 48732 | || ||||| | ||| || | | |||||| || || || ||| ||||| | ||| | Sbjct 85 TCTTGTACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGT 26 Query 48733 TTTTTG 48738 ||| || Sbjct 25 TTTCTG 20 >seq14392 Length=19752 Score = 105 bits (116), Expect = 9e-18 Identities = 127/172 (74%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||||| || || || |||||||| | |||||| |||| | | || Sbjct 8428 CTCTCTTTCATATTTGGTGTAGAGGTCCTCAAATTCTTTGCCCCAACAATCAGCAAGGCC 8369 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCA-CCATCTTCCTTAACTCGTTTCATAA 78015 || |||||| || || | ||||||||||| ||| || || ||||| || ||||| Sbjct 8368 TGGTGCTTCATTGGGACAAAACAATGACCAGTGTTNCATTTTTCTCAACTCTTTCCATAA 8309 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||||||| ||| |||||| ||| ||||| || | | |||||||| Sbjct 8308 AGAGATCAGGTACCCAAAGAGCATAAAAGAGATCACGAGCACGGTGTTCTTC 8257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693649894537600