Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7113 269 4e-67 seq99321 98.7 1e-15 seq14392 95.1 2e-14 seq66449 91.5 2e-13 >seq7113 Length=4078 Score = 269 bits (298), Expect = 4e-67 Identities = 603/900 (67%), Gaps = 22/900 (2%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 |||||| || || || || | ||||| || ||||| ||||| |||| ||||| || Sbjct 907 TTTTTGATACTCCCCAACTCTCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCAA 848 Query 46398 TTCCATAA-AATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456 |||||| ||||||| ||||| | |||| ||||| ||| | | |||| | | | | Sbjct 847 TTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCCA 788 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || |||||| ||||| ||||| || || |||| | ||||| ||||| |||| | Sbjct 787 ACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACTA 728 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576 ||| || || || || | || || ||| || || ||||| | | Sbjct 727 AAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACGA 668 Query 46577 TCGATGTTACTGTTTCCTCACTTGGTGGA-----TGCATCAAATGTTTAAACATTAAACA 46631 || | || || || ||||| | | | ||| | | | | | |||||| Sbjct 667 TCCCT-----TGAATCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTAAACA 613 Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 || ||||| |||||||| |||||||||| ||||||||||| || ||||| | || Sbjct 612 AGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTAATCC 553 Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATAT 46751 ||||||| || || ||||| ||||| || || | |||| ||| || ||||| || Sbjct 552 GGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCGAGCAGAAACTTCCGGAGAAGAAAAT 493 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA 46811 ||||| ||| ||||| || | | ||| | | | |||| | || ||||| Sbjct 492 CCCTTCAACACAAGCGAAAGCAATTAATCT---TTCANATTCGGCACC---ATCGATCCA 439 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 ||| ||||| || || || |||||||||||||| |||||||| || ||| || | Sbjct 438 TCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCACGGAATA- 380 Query 46872 AAAGt-ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 | || |||||| | || ||||| | || || |||| | ||| ||||||||| | Sbjct 379 ATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATACATTTCGG 320 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 |||| ||||||||||| || || || || |||||||| | ||||||| | || | Sbjct 319 AATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAGACTTGAA 260 Query 46991 CCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 |||| | || || | || | ||| ||| || || |||||| ||||||||| | Sbjct 259 TCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCAGCAAAGA 200 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCAT 47107 | || | || || |||| |||| || |||||||| ||| | | | | ||| | Sbjct 199 AAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCCCAATGGC 140 Query 47108 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTAT 47167 | ||||| ||| | ||| |||||||| || |||||||| ||||| || ||||| || | Sbjct 139 GTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAAGGACGCTTCAGCTTTCTTGT 80 Query 47168 ACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 |||| | ||| || | | | ||||| |||||||| ||| ||||| | ||| |||| || Sbjct 79 ACATTTCCCAGATTTGAGGGTATTGAATCGGAAACATACAGAATCTGTCTGGGTTTTCTG 20 >seq99321 Length=426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 |||||||||||| || || ||||| |||||||| ||| |||||| |||||| ||||| Sbjct 21 CATTGGAATAATTCCATTTGATGTCCCATTTGTACCACGAATATAGCTTCCAGTGGCACG 80 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 ||| || || ||| | || || |||||||| ||| ||| | |||||| || Sbjct 81 AATGTTGTGAACAGAAACACCAATGCCTCCTGCAGATTTGCTGATAACAGCACATTCCTT 140 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || ||||| || || || || ||||| || |||| | |||||||||||| Sbjct 141 TAAAGTATCATATATCCCTTCAATGCTATCCTCTTTCATACAGATAAGAAAACAGCT 197 >seq14392 Length=19752 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATT--GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 |||||||||||||| ||||| | || |||||||| | |||||| |||| | | Sbjct 8428 CTCTCTTTCATATTTGGTGTAGAGGTCC--TCAAATTCTTTGCCCCAACAATCAGCAAGG 8371 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCA-CCATCTTCCTTAACCCGTTTCAT 76608 || || |||||| ||||| | ||||||||| | ||| || || ||| | || ||| Sbjct 8370 CCTGGTGCTTCATTGGGACAAAACAATGACCAGTGTTNCATTTTTCTCAACTCTTTCCAT 8311 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||||||| ||| |||||| ||| ||||| || Sbjct 8310 AAAGAGATCAGGTACCCAAAGAGCATAAAAGAGATCACG 8272 >seq66449 Length=274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | ||||||||| ||||| ||||||| | | ||| | || | | Sbjct 123 GTTCCAGCATTGAAGAGTGTAGGAGAAGCATGGGTGAACCGCCTCTGAGACATCAGGTGG 182 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| ||| || ||||| | ||| ||||| || ||||| || | |||||| Sbjct 183 TATGTTTTGATAGCTGACTCAATATCATCCTTG-TGAATACCAACAGCCACTCTCATCAA 241 Query 77113 CATATGCTGAGGTCGTTCTACA 77134 |||||| || ||||| || ||| Sbjct 242 CATATGTTGTGGTCGCTCCACA 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711888703468800