Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3507 102 9e-17 >seq3507 Length=58984 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 ||||| ||||| ||||| |||||||| || | || | ||||| ||| | ||||| Sbjct 8682 TACATCCTTGATGCAGCCGAGGAAGCTGGGATTGATCTGCCATACTCATGTAGGGCAGGT 8623 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 ||||| || | || || ||||| |||| ||||| || || || || ||| ||| Sbjct 8622 GCTTGCTCAACCTGTGCTGGAAAGCTCGAATCTGGAACAGTTGATCAGTCAGACGGATCC 8563 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || || ||||| |||| ||||| | ||||| ||||||||||| ||| || Sbjct 8562 TTCCTCGATGACAACCAACTCGAGAATGGTTATTTGCTGACATGTGTTTCTTA-CCCGCG 8504 Query 161735 A-GCGATTGTGTGATTGAGACTGAGAAAGA 161763 | ||||||||| ||| | || | ||||| Sbjct 8503 ATCCGATTGTGTAATTCACACCCACAAAGA 8474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556836460408800