Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14764 152 1e-31 seq5800 145 2e-29 seq5726 127 5e-24 seq16595 109 1e-18 >seq14764 Length=84029 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||| || |||||||||||||| || | ||| | |||||| Sbjct 1965 AGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGGCCATCT 2024 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| | ||||||||| || | | ||||| ||||| || Sbjct 2025 TCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 2084 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| ||| | || | | ||||||||||||| || || | |||||||| Sbjct 2085 TGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAACCTCCAAGGTAATAGTC 2144 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||||||||| ||||||| ||||| Sbjct 2145 TTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 152 bits (168), Expect = 1e-31 Identities = 164/215 (76%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || ||||| ||||||||||| |||||||| ||||| | ||| | ||||| Sbjct 2768 GAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATC 2827 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 |||||| ||||| || |||||||| | | ||||| || | | |||||||| || Sbjct 2828 TTCTAGTTGCTTT--CCTGCGAAGATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTG 2885 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || |||||| | |||| | ||||||||||||| ||||| ||||| || Sbjct 2886 TCTTGGATCTTGGTTTTGACGTTGTCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATT 2945 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||||||||| ||||| Sbjct 2946 GTCTTACCGGTAAGGGTTTTCACGAAGATTTGCAT 2980 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| || ||||| || ||||| |||||||| || ||||| | |||||| Sbjct 1737 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAAAGTACGACCATCT 1796 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || | |||||||||||| | | ||| |||||||| ||| Sbjct 1797 TCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATCCCTTCCTTGTCT 1856 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || | || | | |||| || ||||| || || | || || || Sbjct 1857 TGGATTTTCGTCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACCTCCAAGGTGATCGTC 1916 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||||||||| ||||| | |||||| Sbjct 1917 TTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | |||||||||| ||| ||||||||||||||||| || ||||| | ||||| Sbjct 2192 GAGAACCAAATGAAGAGTACTCTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCATC 2251 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| || ||| || |||||||| | ||| ||||| || | | |||||| Sbjct 2252 TTCAAGCTGTTTGCCAGCGAAGATCAACCTTTGCTGATCTGGGGGGATTCC 2302 >seq5800 Length=18681 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| ||||| || || || || ||||| ||||| ||||| ||||| | || Sbjct 1954 CTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCAAGGGTG 1895 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| ||||| |||||| |||||||| | | ||| ||||| | | || ||| Sbjct 1894 CGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGAATCCCT 1835 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || || || | || | | | || |||||||| || || ||| Sbjct 1834 TCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACCTCGAGA 1775 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || || |||||||| ||||||||||| ||||||| ||||||||| Sbjct 1774 GTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTTA 1730 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||||||||||||||| || || |||||||| || || | || || |||||| Sbjct 3541 AGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTCCTTCCATCT 3482 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| |||||||| |||||||| || | || || || ||||| || Sbjct 3481 TCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGCGGAATACCCTCCTTATCC 3422 Query 152013 TGAATTTTTTGTTTGACAGTCTCTA 152037 ||||| || ||| ||| | |||| Sbjct 3421 TGAATCTTAGTTTTCACATTATCTA 3397 >seq5726 Length=29179 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || || || |||||||||||||| || | ||| | |||||| Sbjct 26700 AGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTACGGCCATCT 26759 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || || | || ||||| | | ||||||||||| ||| Sbjct 26760 TCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATTCCTTCCTTGTCT 26819 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| || || || || || || || ||| Sbjct 26820 TGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTT 26879 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || |||||||||| ||||||||| Sbjct 26880 TTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq16595 Length=7721 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| |||||||||||||| ||||||||||| ||||| || || || | ||||| Sbjct 1941 AGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAAGGTACGTCCATCC 1882 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || | | ||||||||| | | || || ||||| || Sbjct 1881 TCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGGGAATCCCCTCCTTATCC 1822 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | | ||||| ||||| || || | ||||| || Sbjct 1821 TGAATCTTGGTCTTAACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATGGTC 1762 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||| || || | ||||||| Sbjct 1761 TTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| || |||||||| | | ||||| || | | ||||||||| Sbjct 610 CCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTTCC 551 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || |||||| | || | | |||| |||||||| || || |||||| Sbjct 550 TTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTA 491 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || || |||||||||| ||||| Sbjct 490 ATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152086124175140