Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5800 188 1e-42 seq14764 174 3e-38 seq5726 161 2e-34 seq16595 140 7e-28 seq6055 84.2 5e-11 >seq5800 Length=18681 Score = 188 bits (208), Expect = 1e-42 Identities = 184/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || ||||| || || | || |||||| ||||| |||||||| ||| Sbjct 1960 CCACCTCTGAGACGGAGTACAAGGTGGAGTGTTGATTCTTTCTGGATATTGTAGTCGGCA 1901 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||||||||| |||||||| || ||||||||||| |||||||| ||| Sbjct 1900 AGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGA 1841 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| | || ||| | || || || || ||| ||||| Sbjct 1840 ATCCCTTCCTTGTCTTGGATCTTAGTCTTAACGTTGTCAATGGTATCGGAACTCTCGACC 1781 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 |||||||| || || || || || | |||||| ||||| || |||||||| ||||| Sbjct 1780 TCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATTTT-ATATA 1726 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | || || || || ||||||||||||||| Sbjct 3556 CCACCACGAAGACGAAGGACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 3497 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || |||||||||||||||||||| | | || || || |||| Sbjct 3496 AGTGTCCTTCCATCTTCAAGTTGTTTCCCGGCAAAGATAAGTCTCTGCTGATCTGGCGGA 3437 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||||||||||| || || ||||| | ||| || |||| || Sbjct 3436 ATACCCTCCTTATCCTGAATCTTAGTTTTCACATTATCTAT 3396 >seq14764 Length=84029 Score = 174 bits (192), Expect = 3e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 |||||||| ||||||||||| ||||| || |||||||| |||||||| || || || ||| Sbjct 2790 TCTTTTTGAATGTTGTAGTCGGCAAGAGTACGGCCATCTTCTAGTTGCTTTCCTGCGAAG 2849 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||| || || ||||| || || |||||||||||||| | ||| ||| | Sbjct 2850 ATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGTTTTGACGTTG 2909 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| ||| ||||||||||||||||| |||||||| || | || || ||| Sbjct 2910 TCTATGGTGTCTGAACTCTCGACTTCGAGAGTGATTGTCTTACCGGTAAGGGTTTTCACG 2969 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 2970 AAGATTTGCAT 2980 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||||||||| |||| ||| | ||| || || ||||||||||| ||||| Sbjct 1949 ACCACCACGCAGGCGAAGAACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAATCAGC 2008 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || || ||||| || ||||||||||| | || || || || Sbjct 2009 AAGAGTACGGCCATCTTCAAGCTGTTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2068 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||||| ||| || |||| || ||||| ||| || || Sbjct 2069 AATTCCCTCCTTGTCCTGAATCTTTGTTTTAACATTATCAATGGTGTCTGAACTCTCAAC 2128 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | |||||| ||||| || ||||| Sbjct 2129 CTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTGACGAAGATTTGCAT 2176 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || || | ||| || || ||||| ||||| ||||| Sbjct 1722 CCACCACGAAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCC 1781 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || || || || || ||||| ||||| | || |||||| || Sbjct 1782 AAAGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGGGGG 1841 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || || |||||||||||||| || | || ||| | || || ||||||| |||| || || Sbjct 1842 ATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATGGTGTCCG-AGCTCTCAAC 1900 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || | |||||| |||||||||||||| Sbjct 1901 CTCCAAGGTGATCGTCTTTCCTGTGAGAGTCTTGACGAATATCTGCAT 1948 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| ||| | || || || |||||||||||||| ||||| Sbjct 2177 ACCACCACGCAGACGGAGAACCAAATGAAGAGTACTCTCCTTTTGGATGTTGTAATCAGC 2236 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | || |||||||| || || ||||| || || |||||||| | ||| || || Sbjct 2237 CAAAGTACGGCCATCTTCAAGCTGTTTGCCAGCGAAGATCAACCTTTGCTGATC 2290 >seq5726 Length=29179 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928 || |||||| | || ||||| |||| ||| | || ||| || ||||||||||| || Sbjct 26681 TGCACCACCTCTCAATCGAAGCACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATC 26740 Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988 ||| || || |||||||| || |||||||| ||||| || || | |||||||||||| Sbjct 26741 AGCGAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGG 26800 Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 ||||| || ||||||||||||||||| | || || | ||||| ||||| || | ||| Sbjct 26801 TGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCAGAGGATTC 26860 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || || || || || || | || || ||||| ||||||||||| Sbjct 26861 AACCTCTAGGGTTATGGTTTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTT 26914 >seq16595 Length=7721 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || ||||| || || || | || || ||||||||||| || |||| Sbjct 1958 AACCACCACGGAGACGAAGGACAAGGTGAAGAGTAGACTCCTTTTGGATGTTATAATCAG 1899 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | | || || |||||||| || || || || ||||| |||||||| || ||||| | Sbjct 1898 CCAAGGTACGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAAACGCTGCTGGTCTGGGG 1839 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCG 283049 |||| |||||||| || || ||||| | || || |||| || || || || ||| || Sbjct 1838 GAATCCCCTCCTTATCCTGAATCTTGGTCTTAACATTATCAATGGTATCTGA-GCTCTCC 1780 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || | || || ||||| || ||||| ||||| || |||||||||||| Sbjct 1779 ACCTCCAAGGTAATGGTCTTCCCAGTCAATGTCTTGACAAATATCTGCATT 1729 Score = 118 bits (130), Expect = 2e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 282940 GGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 |||| || || |||||||| || || |||||||||||||| || || ||||| || | Sbjct 612 GGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATTCCTT 553 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 |||||||||||||||| | ||| ||| | || || ||||| ||| ||||| ||||||| Sbjct 552 CCTTGTCTTGGATCTTGGTTTTGACGTTGTCAATGGTGTCAGAACTCTCGACCTCGAGAG 493 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || || | || || ||||| || ||||| Sbjct 492 TAATGGTTTTGCCAGTAAGGGTTTTCACGAAGATTTGCAT 453 >seq6055 Length=32480 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 |||||||||||||| |||||||| ||||||||||| || || || || || ||||||||| Sbjct 19688 TTTTGGATGTTGTAATCAGCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATC 19629 Query 282972 AAACGTTGTTGGTCACCCGGAATACC 282997 | | ||| |||||| ||||| || Sbjct 19628 AGCCTTTGCTGGTCAGGTGGAATGCC 19603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045165512660360