Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq7113 251 7e-62 >seq7113 Length=4078 Score = 251 bits (278), Expect = 7e-62 Identities = 556/827 (67%), Gaps = 33/827 (4%) Strand=Plus/Minus Query 23217 TTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 ||||||||| |||||||| | |||| || || |||||||| || || | |||||| || Sbjct 907 TTTTTGATACTCCCCAACTC-TCTTCTCAAAGAAATTTGTTTTCCCTTGTAATGAAATCA 849 Query 23276 TTTCCATAA-AATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTTT 23334 |||||| ||||||| ||||| | | | ||| || | |||| | | | Sbjct 848 ATTCCATCNCAATCAAAAGGATTTGCAACACCATAAACTTTCTCACATCCAAGTGCACCC 789 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || | ||||| || ||||||||||| ||||||| ||| |||||| |||| ||||||| | Sbjct 788 AACAATCTATCAGCAACAAATTCAATGTATTGACTCATTAAATCACAGTTCATACCTACT 729 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 | ||||| | |||||| | | |||| |||| || ||| |||||||| | Sbjct 728 AAAGCGACTGGCAGTGCATCACAGACGAATTCCCTTTCGATTTCAACTGCATCTTTCACG 669 Query 23455 AT---TTGAACAATAACTTCTTCACTAGGTGGATATTTT-----AAATACTTAAACAATA 23506 || ||||| ||||| || || | |||| | | | | | || Sbjct 668 ATCCCTTGAA--------TCTTCTCTTGGGTAAGCTTTTTCTTCAGAAGGGTGTAGAGTA 617 Query 23507 AACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTA 23566 |||| || ||||| ||||| || |||||||| | || ||||| || || ||||||| Sbjct 616 AACAAGCGAAATCGCAATGAAGCCCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTTA 557 Query 23567 ATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAG 23625 |||| |||||||| || |||||||||| ||| || || | |||| || |||||| ||| Sbjct 556 ATCCGGGCATTAACCCGCGTTTTTTAAGCCAGAAAATCG-AGCAGAAACTTCCGGAGAAG 498 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 ||||| || |||||| || || || | | | | || || ||| || Sbjct 497 AAAATCCCTTCAACACAAGCGAAAGCAATTAATCTTT---CANATTCGGCACCATCG--- 444 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 |||||| || | ||| | || ||| |||||||| |||||||||||||| Sbjct 443 ---ATCCATCTTAAGGCCCAGTCGGCTTTCTTCTTTACACAAGGGATTGTTTCAATTGCA 387 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 || | ||||||| || ||| |||| || || || | || | | |||| Sbjct 386 CGGAATAATCGTGTTTTTTGAACAGAGTCTTTTATGTAGGTTTCTAAGAGGAGAGAATAC 327 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 ||||| ||||| || |||||||| || || || || || ||||| | |||||||| Sbjct 326 ATTTCGGAATGGATGTTTTCAATGGCGATTTGGAAGCCGTAAAACGCACGGGCTTCAGAG 267 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||||| || || | || | ||||| | |||||| ||||||||||||| |||| Sbjct 266 ACTTGAATCTCTTTCATGAAACGATTAGCAAGATTTTCAAGAACAATACCATCAGAAGCA 207 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC---AGTTGATAATTTTTTC 23982 ||||||||||||||||| | | || |||||| |||||| |||| | || | | | Sbjct 206 GCAAAGAAAGCAAGAACGTGGGTAATGAAATGTTGTTCATCGGAAGTTAAAGATGTCTCC 147 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 |||| | ||||| ||| | ||||||||| || | ||||| || Sbjct 146 CAATGGCGTAGATCTTGTGAAAGATCAACTTCTTCTGCCGTCCAGAA 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520723107476000