Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14764 188 2e-42 seq5726 174 4e-38 seq5800 163 7e-35 seq16595 140 8e-28 seq7108 84.2 5e-11 >seq14764 Length=84029 Score = 188 bits (208), Expect = 2e-42 Identities = 166/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || || || || || ||||| ||||| || || || |||||| Sbjct 2977 CAAATCTTCGTGAAAACCCTTACCGGTAAGACAATCACTCTCGAAGTCGAGAGTTCAGAC 2918 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| || |||||||||||||| || || || |||||| Sbjct 2917 ACCATAGACAACGTCAAAACCAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAGCAA 2858 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| || || |||||||| | ||||||||||| || ||| | Sbjct 2857 CGTTTGATCTTCGCAGGAAAGCAACTAGAAGATGGCCGTACTCTTGCCGACTACAACATT 2798 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||| ||||| || || |||||| Sbjct 2797 CAAAAAGAGTCAACTCTCCACCTTGTT 2771 Score = 170 bits (188), Expect = 5e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| ||||| || || ||| | ||||| || || |||||| Sbjct 2173 CAAATCTTCGTCAAGACTCTCACTGGAAAGACTATTACCTTGGAGGTTGAGAGTTCAGAC 2114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||||||||||||||| || ||||| || || || ||||| Sbjct 2113 ACCATTGATAATGTTAAAACAAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 2054 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || ||||||||||| |||||||| | |||||||| ||||| ||| || Sbjct 2053 AGGTTGATCTTTGCAGGAAAACAGCTTGAAGATGGCCGTACTCTTGCTGATTACAACATC 1994 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || ||||| ||| | ||| Sbjct 1993 CAGAAGGAGTCCACACTTCATTTGGTT 1967 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||||||||| ||||||||| | ||||| || ||||| ||| Sbjct 1945 CAGATATTCGTCAAGACTCTCACAGGAAAGACGATCACCTTGGAGGTTGAGAGCTCGGAC 1886 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| || ||||| || || ||| || || ||||| ||||| ||||| || |||||||| Sbjct 1885 ACCATTGACAACGTGAAGACGAAA-ATCCAAGACAAGGAAGGGATCCCCCCTGACCAGCA 1827 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | | || || || || || ||||| |||||||| | ||| | || ||||| || | Sbjct 1826 GAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACTTTGGCTGATTACAATAT 1767 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || || || ||||| Sbjct 1766 CCAGAAGGAGTCCACCCTTCACCTTGT 1740 >seq5726 Length=29179 Score = 174 bits (192), Expect = 4e-38 Identities = 165/210 (79%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 26914 AAAATGC---AGATCTTCGTGAAAACCCTAACAGGGAAAACCATAACCCTAGAGGTTGAA 26858 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||||||||| || ||||| ||||| || ||||| |||||||| || || Sbjct 26857 TCCTCTGACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCA 26798 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||||| || || |||||||||||||| || |||||||| | ||||| || ||| Sbjct 26797 GACCAACAACGTCTCATTTTCGCCGGAAAACAACTTGAAGATGGCCGTACTCTCGCTGAT 26738 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| |||| || ||||| || || ||| Sbjct 26737 TACAACATCCAGAAGGAATCGACTCTTCAT 26708 >seq5800 Length=18681 Score = 163 bits (180), Expect = 7e-35 Identities = 174/229 (76%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 |||||||| |||| ||||| || |||||||| || ||||| || || |||||||| || Sbjct 1730 TAAAATGC---AAATCTTCGTCAAGACTCTCACCGGCAAAACAATAACTCTCGAGGTCGA 1786 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || || || ||||| || ||||| || ||||| || ||||| ||||| || || || Sbjct 1787 GAGTTCCGATACCATTGACAACGTTAAGACTAAGATCCAAGACAAGGAAGGGATTCCCCC 1846 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 ||||| || || | |||||||| || |||||||| || ||||| | || |||||||| Sbjct 1847 AGACCAACAGCGTTTGATCTTCGCTGGGAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 1906 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || |||| |||||||||||||| || ||||| | | |||||| Sbjct 1907 CTACAATATCCAGAAAGAATCAACACTCCACCTTGTACTCCGTCTCAGA 1955 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||| || || || ||| ||||||||||| || || || || || || || ||||| | Sbjct 3395 CATAGATAATGTGAAAACTAAGATTCAGGATAAGGAGGGTATTCCGCCAGATCAGCAGAG 3454 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||||||||| ||||| ||||| || |||||||||||||| ||||| || || ||| | || Sbjct 3455 ACTTATCTTTGCCGGGAAACAACTTGAAGATGGAAGGACACTTGCTGACTACAACATTCA 3514 Query 178106 AAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| Sbjct 3515 GAAGGAGTCTACTCTTCATCTTGT 3538 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | ||||| ||||| || ||||||||||| |||||||||||| Sbjct 1965 CAAATCTTTGTCAAGACCTTAACAGGCAAAACCATTACCCTCGAGGTTGAAAGCTCAGAC 2024 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAG 178020 ||||| || || ||||| || ||| ||||| || |||| Sbjct 2025 ACCATAGACAATGTCAAGACCAAA-ATTCAAGATAAAG 2061 >seq16595 Length=7721 Score = 140 bits (154), Expect = 8e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || || || ||||| || || |||||||| || || || ||| Sbjct 456 CAAATCTTCGTGAAAACCCTTACTGGCAAAACCATTACTCTCGAGGTCGAGAGTTCTGAC 515 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 516 ACCATTGACAACGTCAAAACCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAGCAA 575 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | |||||||| |||||||| || ||||| || Sbjct 576 CGTTTGATCTTCGCTGGAAAACAACTTGAAGACGG 610 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || || ||| | |||||||| |||||||| Sbjct 1733 CAGATATTTGTCAAGACATTGACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTCAGAT 1792 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||||||||| || || || || || || |||||||| Sbjct 1793 ACCATTGATAATGTTAAGACCAAGATTCAGGATAAGGAGGGGATTCCCCCAGACCAGCAG 1852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||||| || |||||| | || | || ||||||||| || Sbjct 1853 CGTTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCTTGGCTGATTATAACATC 1912 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || ||||| Sbjct 1913 CAAAAGGAGTCTACTCTTCACCTTGT 1938 >seq7108 Length=60128 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || |||||||| ||||| |||||| ||| Sbjct 5203 CAGATCTTCGTGAAAACCCTAACTGGTAAGACTATCACCCTTGAGGTTGAAAGCAGCGAC 5144 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| || |||||| ||||| || ||||| ||||| Sbjct 5143 ACAATCGACAATGTCAAAACTAAGATCCAAGACAAGGAAGG 5103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201921487943960