Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5800 96.9 3e-15 >seq5800 Length=18681 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| || || ||||||| |||||||| | || || ||||| || || ||||| Sbjct 1924 TCTTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCATCCTCTAGCTGTTTCCCAGCGAAG 1865 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| ||||||||||| | ||||| | |||||||| ||| || ||| |||| Sbjct 1864 ATCAAACGCTGTTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATCTTAGTCTT-AACGTT 1806 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | || ||| ||| ||||| | ||||| ||||| || || || ||||| || Sbjct 1805 GTCAATGGTATCGGAACTCTCGACCTCGAGAGTTATTGTTTTGCCGGTGAGAGTCTTGAC 1746 Query 41851 GAAAATCTGCATGTTAT 41867 ||| || ||||| |||| Sbjct 1745 GAAGATTTGCATTTTAT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461625915608000