Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq391 551 9e-152 >seq391 Length=7892 Score = 551 bits (610), Expect = 9e-152 Identities = 700/957 (73%), Gaps = 11/957 (1%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || |||||||||||| | |||||||| | ||| | | ||||||| | ||||| | Sbjct 6636 GGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCTGTATTTATTAT 6694 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 ||| ||||| || || ||||| || ||||| || || || |||||||| || |||| || Sbjct 6695 AGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 6754 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 | | || || ||||| || || || ||||| || |||| |||| || || || Sbjct 6755 TCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGG 6814 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 || ||||| || || ||||||||||| ||| | ||||||||||| | ||||||||||| Sbjct 6815 GTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGG 6874 Query 211851 TCCTTACCAGTTGGTAATC-TTC--CACTTCCTTATCGGAATCTCAGCATACATGGGAAG 211907 |||||| | | |||| ||| |||||| | | || | | || ||||| | Sbjct 6875 TCCTTATGAACT---AATCGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCG 6931 Query 211908 ACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGC 211967 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 6932 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 6991 Query 211968 ACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTC 212027 || || |||| ||| ||||| ||| | | |||||| ||||||| || || || Sbjct 6992 TCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTC 7051 Query 212028 AGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGA 212087 || ||||||||| |||| || || || || |||||||| ||| |||||||||| || || Sbjct 7052 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGA 7111 Query 212088 ACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGC 212147 || |||||||||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 7112 GCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 7171 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGG 212207 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 7172 CCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 7231 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 || || ||| | ||||||| ||||| ||||| ||||| || ||||||||||| Sbjct 7232 AAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGT 7291 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 ||||| ||||| || || ||| || | |||||||| ||||| ||||||||| | Sbjct 7292 AGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCG 7351 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGG 212387 ||||||||||||| | || | |||||||| ||| || | ||||| || || |||| Sbjct 7352 TTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGG 7411 Query 212388 TATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGC 212447 ||| | || ||||| ||||||||||| || ||||||||||||||||| || |||||| Sbjct 7412 TATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAG 7471 Query 212448 ATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 |||| || || || |||| |||| | ||||| | || |||||||||||||| Sbjct 7472 TCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGA 7531 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 ||||||||| ||| | ||||| || |||||||| || ||||||| |||||| ||| Sbjct 7532 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAG---CTGCTATCGA 7585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807399341846400