Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq391 623 1e-173 seq582 554 5e-153 >seq391 Length=7892 Score = 623 bits (690), Expect = 1e-173 Identities = 721/964 (75%), Gaps = 8/964 (1%) Strand=Plus/Plus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||||||||| | || |||||||| ||||||| || || | ||| | ||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || | || ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || |||||| | || || ||||| || || || |||||| || | || | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || ||||| | ||||| || || ||||||||||| |||||| ||||||| Sbjct 6800 TTCTGCA--GCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAG 6857 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||| | || || |||||||||| | || | || | |||||| | | || | | Sbjct 6858 TGGTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCT 6917 Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437 || ||||||||||| |||||| | || ||| || |||||||||||||||||| Sbjct 6918 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 6977 Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || ||||| || || || |||||||| || | || || ||| || |||| || ||||| Sbjct 6978 GTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGT 7037 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 ||||| || ||||| | ||||| || || ||| ||| || ||||||| ||| | Sbjct 7038 CAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATC 7097 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || |||||||||||||| |||||||| || || ||| | |||||||| ||| Sbjct 7098 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 7157 Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-T 166676 |||||||| || || || || || ||||| || | || ||||| | | | | | Sbjct 7158 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 7216 Query 166677 CCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 166736 | | || ||||| |||| ||| ||| ||| | ||||||| || |||||||| ||||| Sbjct 7217 CAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGA 7276 Query 166737 GACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 166796 || || |||||||| |||||||||||||| || ||||| ||||||||||||| ||| Sbjct 7277 AACTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAG 7336 Query 166797 CTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 166856 |||||||||||||| || | ||||||||| | || || |||||||| ||||||| || Sbjct 7337 TTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTG 7396 Query 166857 GTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 |||||||||| | ||| |||| || ||||| |||||||| |||||||||||||||||||| Sbjct 7397 GTTTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCA 7456 Query 166917 GTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGC 166976 || | | ||| |||| |||||||| | ||||| ||||| ||| || | |||||||| Sbjct 7457 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGC 7516 Query 166977 TGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGC 167036 | || ||||||||||| ||||| || ||||||||||| ||||||||||| || | || Sbjct 7517 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGC 7576 Query 167037 TGCT 167040 |||| Sbjct 7577 TGCT 7580 >seq582 Length=29683 Score = 554 bits (614), Expect = 5e-153 Identities = 733/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || |||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCT 167478 || || ||||||||||| || ||||| | ||| | || || ||| ||||| | Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 25123 Query 167479 CACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 167538 || ||||| || || ||||||||| | | | | || ||| | | |||| ||||| Sbjct 25124 AACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGG 25183 Query 167539 TCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGT 167598 |||||| | || |||||||| | | ||||| || | || || || ||| |||| || Sbjct 25184 TCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGT 25243 Query 167599 GGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAG 167658 || || || || || || || || ||||| |||||| | || || || || | | | Sbjct 25244 TGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCG 25303 Query 167659 ACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGT 167718 | || | || ||||| ||||| || || || |||||||| |||||||| ||||| Sbjct 25304 ATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 25363 Query 167719 GTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGG 167778 ||||| || || || ||||| | || ||||| ||||||| |||||||| ||||| Sbjct 25364 TTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGG 25423 Query 167779 TGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAA 167838 ||| ||||| |||||||||||| | ||||| | || || || |||||||||||||| || Sbjct 25424 TGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAA 25483 Query 167839 CCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCA 167898 ||| || ||||||||||||||||| ||| | | |||| ||| |||| | || || || Sbjct 25484 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 25543 Query 167899 TGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGC 167958 ||||| ||| ||||| |||||| | | ||| |||||||| ||||| || ||| || Sbjct 25544 TGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGC 25603 Query 167959 ATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTC 168018 ||| | | ||||| | || ||||||||||| ||||| || |||||||| || ||||| Sbjct 25604 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 25663 Query 168019 TCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGT 168078 ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || || Sbjct 25664 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 25723 Query 168079 TCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCG 168138 || || | || | |||| ||| || |||| | ||||||| || | || || || Sbjct 25724 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACG 25783 Query 168139 TGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTT 168198 ||| |||||||| || || |||||| | | ||||| || ||||| || ||||||||||| Sbjct 25784 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTT 25843 Query 168199 CTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCA 168258 ||| || ||||| || ||| | || ||||| | ||||| |||||||| | ||| || Sbjct 25844 CTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 25903 Query 168259 ACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || ||||||||| || ||||||| || || || | || | || |||||||| Sbjct 25904 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567122524224000