Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq391 634 7e-177 seq582 531 6e-146 seq389 87.8 2e-12 >seq391 Length=7892 Score = 634 bits (702), Expect = 7e-177 Identities = 737/989 (75%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 ||||| | ||| ||||| || | ||||| || || |||| ||||| || ||| || Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || || | ||| | |||||| |||| || || | |||||||| |||||||| Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTCC 6712 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || || || ||||| || |||||||| || |||| || || | || || ||||| Sbjct 6713 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 6772 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 || || || ||||| || ||||| |||| || ||||| | ||||| || || || Sbjct 6773 TATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAAT 6832 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 ||||||||| ||||| |||| |||||| | || || |||||||||| |||| |||| Sbjct 6833 CTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGT 6892 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | |||||| | |||| | | || ||||||||||||||||||||| || || Sbjct 6893 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 6952 Query 180107 CTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 180165 |||||||||| || ||||| ||| || |||||||| ||||| || || || || ||| Sbjct 6953 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7011 Query 180166 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCA 180225 |||| ||| | |||| || |||||||||| || ||||| | ||||| || || | Sbjct 7012 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7071 Query 180226 TTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACC 180285 | ||||| || ||||||| ||| | || ||||| || |||||||||||||| ||||||| Sbjct 7072 TCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACC 7131 Query 180286 CCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACG 180345 | || |||||| | || ||||| ||||| |||||||| || || || || ||||| | Sbjct 7132 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 7191 Query 180346 GTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACG 180405 |||| |||| || ||| || | | |||||||| |||| ||| || ||| | | Sbjct 7192 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 7251 Query 180406 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCG 180465 |||||| || |||||||| ||||| || || |||||||| ||||| ||||| || || | Sbjct 7252 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTG 7311 Query 180466 GTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 180525 |||| |||||||||| ||||| ||||||||||| ||||| | ||||||||| | | Sbjct 7312 GTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAG 7371 Query 180526 CAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 180585 | || |||||||| | || || ||||| ||||| |||| | || || ||||| |||| Sbjct 7372 CTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCA 7431 Query 180586 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACA 180645 |||| |||||||||||||||||||| || | ||||| ||||||||||||| | |||| Sbjct 7432 ACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 7491 Query 180646 CTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 180705 | ||||| || | | ||||| ||| || ||||||||||||||||| || ||||||| Sbjct 7492 CCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 7551 Query 180706 CTCACAACTTCCCACTTGACCTGGCAGCT 180734 |||| |||||||| || ||| | || ||| Sbjct 7552 CTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 531 bits (588), Expect = 6e-146 Identities = 730/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || |||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||||||| | || | || || ||| | || || || || ||| Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 || || || ||||| ||||| |||||||| ||| || | || || ||| |||||| | Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 25123 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || || || || || || |||||| | | | | || ||| | | |||| ||||| Sbjct 25124 AACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGG 25183 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 ||||||||| || || ||||| || ||| ||| | || || || ||| |||| || Sbjct 25184 TCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGT 25243 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || || || || || ||||| || || ||||||||| | | || || ||||||||||| Sbjct 25244 TGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCG 25303 Query 181783 -TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 ||| || | | || || || ||||| || || || || ||||| |||||||| || | Sbjct 25304 ATCTGTTCA-ATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 25362 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| || || ||||| | || || || ||||||| ||||| || ||||| | Sbjct 25363 TTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTG 25422 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 |||| || || || || | ||| |||| || | || || |||||||| |||||||| | Sbjct 25423 GTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGA 25482 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 | || || ||||||||||| ||||| ||| | |||| | || | || | || |||| Sbjct 25483 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTC 25542 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | |||| || || || |||||| | | | | || ||||| |||||||| ||| | Sbjct 25543 ATGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGG 25602 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | || | ||||||||| |||||||| |||||||||||||| || |||||||| |||| Sbjct 25603 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGT 25662 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 | || ||||| || |||| ||| |||||| | ||||| |||||||||||| | |||| Sbjct 25663 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 25722 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 182261 | || || | ||| | |||| ||| | | || | | ||||| || | ||||| | Sbjct 25723 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTAC 25782 Query 182262 GTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGT 182321 |||| |||||||| || ||||| |||||| | ||| | ||||| || || || || || | Sbjct 25783 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTT 25842 Query 182322 TCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATC 182381 ||||||| || || |||||||| || |||||| | ||||| ||| | || | |||| Sbjct 25843 TCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 25902 Query 182382 AACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | || ||||| ||| || | ||||||||||| || ||||| | || ||||| || Sbjct 25903 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 >seq389 Length=5342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 3622 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 3563 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 3562 CCTACTTGGGGAG 3550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610278993417600