Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq391 513 2e-140 seq582 322 6e-83 >seq391 Length=7892 Score = 513 bits (568), Expect = 2e-140 Identities = 684/945 (72%), Gaps = 8/945 (1%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || |||||||||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 6636 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTAT 6694 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | ||||| || | || || Sbjct 6695 AGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 6754 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 | | | || || ||||| || || || ||||| || |||| | || ||||| || Sbjct 6755 TCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGG 6814 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | ||||| ||||||||||||||||| ||| | |||||||| ||||| || |||||||| Sbjct 6815 GTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGG 6874 Query 169683 TCCTTATCAGTTGGTAATC-TTC--CACTTCCTTATTGGTATCTCAGCATACATGGGAAG 169739 ||||||| | ||||| ||| |||||| | ||||| | | || ||||| | Sbjct 6875 TCCTTATGA---ACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCG 6931 Query 169740 ACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGC 169799 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 6932 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 6991 Query 169800 ACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTC 169859 || || | || || ||||| ||||| | |||||| | ||||| || || || Sbjct 6992 TCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTC 7051 Query 169860 TGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGA 169919 |||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||| || || Sbjct 7052 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGA 7111 Query 169920 GCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATC 169979 ||| ||||| || ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 7112 GCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 7171 Query 169980 TTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGA 170039 |||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 7172 CCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 7231 Query 170040 GCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGT 170099 | || || ||| | ||||| | ||||| ||||| |||||||| || ||||| || Sbjct 7232 AAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGT 7291 Query 170100 AGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAG 170159 ||| || || ||||| |||||||| | |||||||| |||||| ||||||||||| | Sbjct 7292 AGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCG 7351 Query 170160 AAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGG 170219 | ||||||||||| |||| | || ||||| | || | ||||| || || |||| Sbjct 7352 TTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGG 7411 Query 170220 TATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGC 170279 ||| | || ||||| |||||| | || ||||||||||| |||||||| || |||||| Sbjct 7412 TATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAG 7471 Query 170280 TAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGA 170339 | | || | | || |||| |||| | | ||| | || ||| | |||||||| Sbjct 7472 TCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGA 7531 Query 170340 AGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 ||||||||||||| | ||||| || |||||||| |||||| |||| Sbjct 7532 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGC 7576 >seq582 Length=29683 Score = 322 bits (356), Expect = 6e-83 Identities = 697/1043 (67%), Gaps = 31/1043 (3%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || ||||| || || |||| ||||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| || || ||||| Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || || ||| || Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 25124 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || ||||| ||||| || |||| ||| | | || | |||| |||| || | Sbjct 25125 ACCGCAGCGGTTTCTACTCCTG-----CTAATAGTTTAGCACACTCTTTATTGTTACTAT 25179 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| |||||||||||||| ||| |||||||| ||| | || || | |||| | Sbjct 25180 GGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTT 25239 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 | || || | ||||| | || | ||| |||||||| ||| | | || || || | | Sbjct 25240 TCGTTGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTG 25299 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | || ||| | | ||||| || ||| |||||||||||| | || || || | Sbjct 25300 CTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTT 25359 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | || || || |||||| |||||||| ||||||| || ||||| | Sbjct 25360 TTGTTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTT 25419 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | ||||| ||||| || ||| | | || |||| | ||||| || || ||| || Sbjct 25420 TTGGTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGC 25479 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| |||||||| |||||||| ||||| || || | || | || | |||| || | Sbjct 25480 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTA 25539 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 |||||||||| || || | || || || | ||| | || |||| Sbjct 25540 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAGG------------ATGGTGAT---- 25583 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 |||| |||||||| || ||| | || || || | ||||||||||| | Sbjct 25584 -GGGGCAAA----TACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 25638 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || |||| || ||| | || ||||| || || ||||| ||||||| || || ||| | | Sbjct 25639 TGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 25698 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||| ||| ||||||| || || || || | ||| | |||| || | || Sbjct 25699 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGG 25758 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || ||||| || | ||||| | || || || || || || || || || | |||| Sbjct 25759 TAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 25818 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 | ||||| || || || || ||||||||||| || ||||| || | || |||||||| Sbjct 25819 CTGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTC 25878 Query 171484 GAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGT 171543 | || |||||| | | || || || ||||| ||| | ||||||| || || || Sbjct 25879 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTC 25938 Query 171544 TACCAAGAGGTAACGCACTTTAA 171566 |||| | || ||||| |||||| Sbjct 25939 TACCCCGTGGAAACGCTCTTTAA 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579101011929600