Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq391 661 0.0 seq582 594 6e-165 >seq391 Length=7892 Score = 661 bits (732), Expect = 0.0 Identities = 727/962 (76%), Gaps = 4/962 (0%) Strand=Plus/Plus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || | || ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAAC 6679 Query 163871 CATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTG 163929 ||||| || || | |||||| | |||||||| || || || || ||||||||||||| Sbjct 6680 T-TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTG 6738 Query 163930 AACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCT 163989 |||||||| | || || || | || || ||||| || || || ||||| || |||| Sbjct 6739 AACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTA 6798 Query 163990 CGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAAT 164049 | || || ||||| | ||||| ||||| || |||||||| ||||| ||||||| | Sbjct 6799 CTTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGT 6858 Query 164050 GGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATG 164109 || | ||||| |||||||||| |||| |||| | |||||| | | ||| | | Sbjct 6859 GGTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTT 6918 Query 164110 CATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTG 164169 || |||||||||||||||||||| || |||||| |||||||||||||||||| || Sbjct 6919 GTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTG 6978 Query 164170 TTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 164229 |||| || || || || |||||||| || | || || ||| || |||| || |||||| Sbjct 6979 TTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTC 7038 Query 164230 AAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGG 164289 |||| || ||||| | ||||| || || |||||||| || ||||||| ||| | | Sbjct 7039 AAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCG 7098 Query 164290 TGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCG 164349 | ||||| || |||||||||||||| |||||||| || || ||| | || || ||||| | Sbjct 7099 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 7158 Query 164350 TATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC 164409 |||| ||||| || || || ||||| ||||| ||||| |||| |||||| || | Sbjct 7159 TATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCA 7218 Query 164410 GTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAA 164469 | |||||||| |||| ||| || ||| | ||||||| || |||||||| ||||||| Sbjct 7219 GGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 7278 Query 164470 CATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCAT 164529 | || ||||| || || ||||| ||||| |||||||| ||||||||||||| ||| | Sbjct 7279 CTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTT 7338 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 |||||||||| ||||| || ||||||||| | ||||| |||||||| | || || |||| Sbjct 7339 TCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGT 7398 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGT 164649 | || || | ||| || || ||||| |||||||| |||||||||||||||||||| | Sbjct 7399 TTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAAT 7458 Query 164650 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTG 164709 | | | ||| |||| |||||||| | ||||| ||||| || | | ||||| ||| Sbjct 7459 CTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTA 7518 Query 164710 GTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTG 164769 || ||||||||||||||||| || ||||| ||||| ||||||||||| || | |||| Sbjct 7519 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTG 7578 Query 164770 CT 164771 || Sbjct 7579 CT 7580 >seq582 Length=29683 Score = 594 bits (658), Expect = 6e-165 Identities = 738/1004 (74%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| ||||||||||| || | || ||| Sbjct 24957 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 25016 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | || | || |||||| |||| || || || || | || ||| Sbjct 25017 CCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGG 25076 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||| ||| |||| || ||||| ||||||| | || || | Sbjct 25077 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCGG 25134 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||||||||| || | | | | || ||| | || | || ||||||||||| || | Sbjct 25135 TTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCAC 25194 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||||||||| | ||| ||| | || || || ||| |||| || || || || | Sbjct 25195 AAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATG 25254 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 | |||||||| ||||| ||||| ||| | |||||||| ||| | || || ||| || | Sbjct 25255 GTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAAT 25314 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| || || ||||||||||| || |||||||||||| || || Sbjct 25315 -TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTC 25373 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || | ||||| || |||||||||| || || ||| || || ||||| Sbjct 25374 CTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCT 25433 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || || ||| |||| || | ||||| || ||||||||||| |||| || |||||| Sbjct 25434 ATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCAT 25493 Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802 |||||||| ||||| ||| | |||| | ||| |||| | || || ||||||| ||| Sbjct 25494 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACT 25553 Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862 ||||| |||||| | | | | |||||||| | |||||||| ||| ||| ||| || | Sbjct 25554 GTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCA 25613 Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 25614 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 25673 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 25674 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 25733 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | | || | | ||||| || | ||||| ||||| |||||| Sbjct 25734 GGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGAC 25793 Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102 || || ||||| || ||| | ||||| ||||| || || |||||||| |||||||| ||| Sbjct 25794 TTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAA 25853 Query 166103 AACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAG 166162 || |||||||| || |||||| ||||||||||| |||| | ||||| || ||||| Sbjct 25854 AATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 25913 Query 166163 AACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 ||| || | |||||||| || ||||| || | || ||||| || Sbjct 25914 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556817313513600