Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq391 580 1e-160 >seq391 Length=7892 Score = 580 bits (642), Expect = 1e-160 Identities = 724/987 (73%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| | || ||||| ||||| || Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATAGCTGCTCC 6712 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | || |||||||| Sbjct 6713 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 6772 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || || | ||||| |||||||| Sbjct 6773 TATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAAT 6832 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || || | |||||||||||||| |||||||||||||| | | ||| Sbjct 6833 CTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACT---AAT 6889 Query 168790 C-TTC--CACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATA 168846 | ||| |||||| || | || | || || |||||| | |||||||| | | Sbjct 6890 CGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 6949 Query 168847 CAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATT 168906 | | || |||||| | |||||||| |||||| |||||||| || || | || || Sbjct 6950 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTAC 7009 Query 168907 TGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGG 168966 ||| || ||| | | |||||| | ||||| || || |||||||||||||||||||| Sbjct 7010 TGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 7069 Query 168967 AATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCA 169026 ||| ||||| || |||||||| ||| |||||||||| || ||||||||||| |||||||| Sbjct 7070 AATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCA 7129 Query 169027 TCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCA 169086 || || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||| Sbjct 7130 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 7189 Query 169087 TGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTA 169146 |||||| | ||||| ||| | | ||||| || || || || | |||||| ||| | Sbjct 7190 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGA 7249 Query 169147 TGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 ||||||| ||||||||||| |||||||| ||||| || || || || ||||| || || Sbjct 7250 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTT 7309 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 169266 ||| |||| |||||||| ||||| |||||||||||||| | | | ||||||||| | Sbjct 7310 TGGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTT 7369 Query 169267 AGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 169326 ||| | | || || | || | ||||| || || ||||||| |||| ||||| || Sbjct 7370 AGCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTT 7429 Query 169327 CAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCC 169386 |||| | ||||| || ||||| |||||||| || || ||| | | ||| | ||| Sbjct 7430 CAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 7489 Query 169387 TACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAA 169446 || |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| Sbjct 7490 CACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 7549 Query 169447 CGCTCACAACTTCCCACTAGACTTAGC 169473 ||||| |||||||| ||||||||||| Sbjct 7550 TGCTCATAACTTCCCTCTAGACTTAGC 7576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564332662771200