Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq391 502 3e-137 seq582 336 3e-87 >seq391 Length=7892 Score = 502 bits (556), Expect = 3e-137 Identities = 707/990 (71%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | |||| | || ||||| ||||| | Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATAGCTGCTCCT 6713 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 6714 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 6773 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || || ||||| || |||| | || || || || | ||||| ||||| ||| Sbjct 6774 ATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAATC 6833 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||||||||||||| | | |||| Sbjct 6834 TGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACT---AATC 6890 Query 172120 -TTC--CACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATAC 172176 ||| |||||| | | ||| | | || ||||| | |||||||||| | | Sbjct 6891 GTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 6950 Query 172177 AGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTT 172236 | | |||||| | || ||||| ||| ||||||||||| || || |||| || | Sbjct 6951 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7010 Query 172237 GCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 172296 ||||| ||| | | || ||| ||||||| || || |||||||||||||| ||||| Sbjct 7011 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7070 Query 172297 ATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCAT 172356 ||||| ||||| |||||||||||| |||| ||||| || ||||| ||||| || ||||| Sbjct 7071 ATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCAC 7130 Query 172357 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCAC 172416 || || |||||| ||| ||||| || | || || || || |||| || ||||| Sbjct 7131 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 7190 Query 172417 GGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTAC 172476 ||||| || || || ||| | | ||||| || || || ||| ||||| ||| | Sbjct 7191 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 7250 Query 172477 GGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 172536 || |||| ||||| ||||| |||||||| || ||||| ||||| || || ||||| ||| Sbjct 7251 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTT 7310 Query 172537 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 172596 ||||| | |||||||| |||||| |||||||||||| | | | ||||||||| || Sbjct 7311 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 7370 Query 172597 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 172656 || | || ||||| | || | ||||| || || ||||||| |||| ||||| ||| Sbjct 7371 GCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTC 7430 Query 172657 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCT 172716 ||||| ||||||||||||||||||||||| || || ||| | | ||| | || Sbjct 7431 AACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAC 7490 Query 172717 ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAAT 172776 || |||| ||| | ||||| | || ||||| ||||||||||||||||||||| | ||| Sbjct 7491 ACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 7550 Query 172777 GCACACAACTTCCCATTAGACCTTGCTTCT 172806 || || |||||||| ||||| | ||| || Sbjct 7551 GCTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 336 bits (372), Expect = 3e-87 Identities = 699/1043 (67%), Gaps = 31/1043 (3%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | | | || |||||||| || || ||||| Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 25124 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || ||||| || || || |||| ||| | | || | |||| |||| || | Sbjct 25125 ACCGCAGCGGTTTCTACTCCTG-----CTAATAGTTTAGCACACTCTTTATTGTTACTAT 25179 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| |||||||||||||| || ||||||| ||| | || || || |||| | Sbjct 25180 GGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTT 25239 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 | || || | ||||| | || | ||| |||||||| ||| | |||||||| || | | Sbjct 25240 TCGTTGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTG 25299 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | || ||| | | ||||| || ||| |||||||||||| | || || || | Sbjct 25300 CTCGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTT 25359 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | || |||| || ||| |||| ||| ||||||| || |||||| | Sbjct 25360 TTGTTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTT 25419 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | ||||| ||||| || ||| | | || |||| | ||||| || || ||| || Sbjct 25420 TTGGTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGC 25479 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 |||| |||||||| |||||||| ||||| || || | || | || | ||||| || | Sbjct 25480 TGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTA 25539 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 |||||||||| || || | || || || | ||| | || ||| || Sbjct 25540 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAGG------------ATGGTGATGG-- 25585 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 | | || ||| | || ||| | || || || | |||||||||||| | Sbjct 25586 -------GGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 25638 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || |||| || ||| | || ||||| || || ||||| | || ||||| || ||| | | Sbjct 25639 TGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 25698 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||| ||| | ||||| || ||||| || | ||| | |||| | | || Sbjct 25699 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGG 25758 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | || ||||| || | ||||| | || || ||||| || || || || || | |||| Sbjct 25759 TAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 25818 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 | |||||||| || || || ||||||||||| || ||||| || | || |||||||| Sbjct 25819 CTGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTC 25878 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965 | || |||||| | || |||||| || ||||| ||| | |||| || || || || Sbjct 25879 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTC 25938 Query 173966 TACCAAGAGGTAACGCACTTTAA 173988 |||| | || ||||| |||||| Sbjct 25939 TACCCCGTGGAAACGCTCTTTAA 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587937706118400