Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq391 607 9e-169 seq582 484 7e-132 >seq391 Length=7892 Score = 607 bits (672), Expect = 9e-169 Identities = 734/992 (74%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 |||||| | ||| |||| || | ||||| || || |||| ||||| || || | Sbjct 6593 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 6652 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 |||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||| Sbjct 6653 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTC 6711 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || || || || || |||||||| || |||| || || | || || |||| Sbjct 6712 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 6771 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 | || || || ||||| || |||| |||| || ||||| | ||||| || || | Sbjct 6772 ATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAA 6831 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 |||||||||| |||||| ||||||||||| | || || |||||||||| |||| | | Sbjct 6832 TCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCG 6891 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | |||||| | | || | | || ||||| ||||| |||||||| || || Sbjct 6892 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 6951 Query 162743 GTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCG 162801 |||| ||||||||||| ||||| ||| || ||||| || || || |||||||| || | Sbjct 6952 GTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7010 Query 162802 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGT 162861 || || ||| || |||| || |||||||||| || ||||| | ||||| | || Sbjct 7011 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7070 Query 162862 ATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921 ||| |||||| ||||||| ||| | || ||||| || ||||||||||| || ||||| Sbjct 7071 ATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCAC 7130 Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCAC 162981 || || |||||||| ||||| || ||||| ||||| || || || || ||||| ||||| Sbjct 7131 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 7190 Query 162982 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 163041 ||||| ||||| || ||| | || | || || || |||| ||| || ||| | Sbjct 7191 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 7250 Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||||| ||||||||||| ||||| || || |||||||| || || |||||||| || Sbjct 7251 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTT 7310 Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||| | Sbjct 7311 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 7370 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCAT 163219 ||||| |||||||| |||| || ||||| || | ||| | || | | || ||||| | Sbjct 7371 GCTGCTTGGCCTGTAATCGGTATTTGGTTTACTG--CTTTGGGTATTAGTACTATGGCTT 7428 Query 163220 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 163279 ||||||| |||||||||||||||||||| || | ||||| |||| |||||||| | | Sbjct 7429 TCAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 7488 Query 163280 ACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCA 163339 |||||||||| || | | |||||||| | ||||||||||||||||| || || | Sbjct 7489 ACACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 7548 Query 163340 ATGCTCACAACTTCCCACTTGACCTGGCAGCT 163371 ||||||| |||||||| || ||| | || ||| Sbjct 7549 ATGCTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 484 bits (536), Expect = 7e-132 Identities = 727/1023 (71%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || |||||||| ||| | ||||||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||||||| | || | || || ||| |||| |||||||| || Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCT 163799 || || || ||||| ||||||||| |||| | ||| ||| | || || ||| ||||| | Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 25123 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 || || || || || || |||||| | | | | || ||| || || || || |||| Sbjct 25124 AACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTATTGTTACTATGGG 25182 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 ||||||| || || || ||||| || ||| ||| | || || || |||| ||| | Sbjct 25183 GTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCG 25242 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || || || || || || || || || ||||| ||| | || || || |||||||||| Sbjct 25243 TTGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTC 25302 Query 163979 GC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | ||| || | | | || || ||||| || || ||||||||||| |||||||| || Sbjct 25303 GATCTG-TTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 25361 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| ||| || || || || || | ||||| || ||||||| || || || |||| Sbjct 25362 GTTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTT 25421 Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157 || || ||||| || || |||||| | |||| ||||||| |||||||||||||| || Sbjct 25422 GGTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTG 25481 Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217 ||||| || ||||||||||||||||| ||| || | |||| || |||||| |||||| Sbjct 25482 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATT 25541 Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277 || || | || || |||||||| || | ||| ||||| || ||||| || || | Sbjct 25542 CATGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGG 25601 Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337 || ||| | | || || | ||||| |||||||| ||||| || || |||||||| ||| Sbjct 25602 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGG 25661 Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 25662 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 25721 Query 164398 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 164457 || || || | ||| |||||| || |||| | | || || || | || || Sbjct 25722 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 25781 Query 164458 CGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACT 164517 ||||| || || || || || || || | ||||| ||||||||||| || || ||| Sbjct 25782 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACT 25841 Query 164518 TTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGAC 164577 ||||| ||||| || || | || |||||||| | ||||| ||| | || | || Sbjct 25842 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 25901 Query 164578 CAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635 |||| || || ||| || | ||||| || || || || || | || || || |||| Sbjct 25902 CAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 25959 Query 164636 AAT 164638 ||| Sbjct 25960 AAT 25962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557476386288000