Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq391 643 1e-179 seq582 609 3e-169 >seq391 Length=7892 Score = 643 bits (712), Expect = 1e-179 Identities = 726/979 (74%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | |||||||| || |||| ||||| || ||| ||||||||||| Sbjct 6603 TGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 6662 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | |||| | ||||| || || || |||||| | | ||||||||| || || Sbjct 6663 ACCTTATTGACTGCAA-CTTCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGA 6721 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 6722 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTC 6781 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||||| || ||||| ||||| |||||||| | ||||| || || ||||||||||| Sbjct 6782 GGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGC 6841 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| | | || |||||||| |||||||||||||||| |||| | ||| | ||||| Sbjct 6842 GGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTT 6901 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | ||||||||||||||||||||||| || |||||| ||||| Sbjct 6902 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 6961 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 |||||| ||||| ||||||||| || ||||| || || || || ||||||| ||| | Sbjct 6962 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTT 7021 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||| || |||||||||| || ||||| | |||||||| || ||||||||||| Sbjct 7022 GATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 7081 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||||| ||| | || ||||| || |||||||||||||| |||||||| || || || Sbjct 7082 TTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 7141 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | || || ||||| ||||||||||| || || || ||||| ||||| ||||| |||| Sbjct 7142 GTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGT 7201 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 || ||| || | | |||||||| |||| ||| || ||| | ||||||| || Sbjct 7202 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATT 7261 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||||||||| |||||||||||||| || ||||| |||| Sbjct 7262 CGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGAT 7321 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || ||||||||||| || || | ||||||||||| || || ||||| Sbjct 7322 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCC 7381 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| | ||||| |||| |||||||| ||||| Sbjct 7382 TGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGG 7441 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 ||||||||||||||| ||| | |||||||| ||| || | || ||||| || Sbjct 7442 TTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGA 7501 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | | ||||||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 7502 TATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 7561 Query 168056 CCCTCTCGACCTTGCTGCT 168074 |||||| ||| | |||||| Sbjct 7562 CCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 609 bits (674), Expect = 3e-169 Identities = 741/1004 (74%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| ||||||||||| || | || ||| Sbjct 24957 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 25016 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | || | || |||||| |||| || || | || || || ||| Sbjct 25017 CCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGG 25076 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || ||||| ||||| ||| |||| ||| |||| ||||||| | || || | Sbjct 25077 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCGG 25134 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || |||||| || || | | | || ||| | || | || ||||||||||| |||| Sbjct 25135 TTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCAC 25194 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 |||||||||| | ||||||||| | || || || ||| |||| || || || || | Sbjct 25195 AAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATG 25254 Query 168793 GGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 168851 | |||||||| ||||| ||||| ||| | |||||||| ||||| || || ||| || | Sbjct 25255 GTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAAT 25314 Query 168852 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 168911 | || || || ||||| || || ||||||||||| || |||||||||||| || || Sbjct 25315 -TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTC 25373 Query 168912 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 168971 || || || || | ||||| || |||||||||| || || ||| || || |||| Sbjct 25374 CTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCT 25433 Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCAT 169031 || || ||||| |||| || | ||||| || ||||||||||| ||||| ||||||||| Sbjct 25434 ATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCAT 25493 Query 169032 ATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACA 169091 |||||||| || || ||| | ||||| | || |||| | || |||||||||| ||| Sbjct 25494 ATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACT 25553 Query 169092 GTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGC 169151 ||||| |||||| | | | | |||||||| |||||||| ||| || ||| || Sbjct 25554 GTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCA 25613 Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || |||||||||||||| || ||||| || ||||| || |||||| Sbjct 25614 ACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTT 25673 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 169271 || |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 25674 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 25733 Query 169272 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 169331 ||| | |||| ||| | | || | | ||||| || | ||||| ||||| |||||| Sbjct 25734 GGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGAC 25793 Query 169332 TTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAG 169391 || |||||||| || ||| | ||||| |||||||| || ||||| || ||||||||||| Sbjct 25794 TTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAA 25853 Query 169392 AACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAG 169451 || || ||||| ||||||||| ||||||| ||| | || || ||||| |||||||| Sbjct 25854 AATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 25913 Query 169452 AACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||| || | ||||||||||| || || ||||| || || || || Sbjct 25914 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560499802656000