Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq391 668 0.0 seq582 598 5e-166 >seq391 Length=7892 Score = 668 bits (740), Expect = 0.0 Identities = 730/964 (76%), Gaps = 8/964 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || |||| ||||||||||| |||||||||| || | ||| | ||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | || ||| |||| || ||||| || ||||| || ||||| || || Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || || | || || ||||| || || || |||||| || | || | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || ||||| | ||||| ||||||||||||||||| || ||| |||||||||| Sbjct 6800 TTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTG 6859 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || |||||||||| |||| | ||| | |||||| | | || | || || Sbjct 6860 GTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGG--TGTA-GC 6916 Query 182120 CT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 | | ||||| ||||||||||||||| || ||| | ||||||||||| ||||| Sbjct 6917 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGC 6976 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || || || ||||||| ||||| |||| || |||| Sbjct 6977 TGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGG 7036 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 7037 TCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 7096 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || ||||| |||||||||||||| |||||||| || || |||||||| |||||||| || Sbjct 7097 CGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 7156 Query 182357 TGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGT 182416 ||||||||| || || || |||||||| ||||| ||||| ||||| || ||| | | Sbjct 7157 TGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 7216 Query 182417 CCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 182476 | | || || || || | || || ||| | ||||||| ||||||||||| ||||| Sbjct 7217 CAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGA 7276 Query 182477 GACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATC 182536 || ||||||||||| || || ||||| || || ||||| |||||||||||||| || Sbjct 7277 AACTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAG 7336 Query 182537 ATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 ||||||||||| ||||| || ||||||||| | ||||| |||||||| | || || || Sbjct 7337 TTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTG 7396 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 ||| || || | ||| | || ||||| |||||||| |||||||||||||||||||| Sbjct 7397 GTTTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCA 7456 Query 182657 GTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGC 182716 || | ||||| |||| |||||||| ||||||| ||||| ||| | | |||||||| Sbjct 7457 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGC 7516 Query 182717 TGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGC 182776 | ||||||||||||||||||||||| ||||| || || |||||||| ||||| | || Sbjct 7517 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGC 7576 Query 182777 TGCT 182780 |||| Sbjct 7577 TGCT 7580 >seq582 Length=29683 Score = 598 bits (662), Expect = 5e-166 Identities = 740/1009 (73%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || |||||||| || | || || Sbjct 24957 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 25016 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | ||| | || |||||| |||| || ||| | ||||| || ||| Sbjct 25017 CCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGG 25076 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTT-ACGGCAGCTG 183370 |||||||||||| | || ||| ||| | ||||| ||| | |||||| || ||||| | Sbjct 25077 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC--AATTTCTTAACCGCAGCGG 25134 Query 183371 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTC 183430 | || || |||||| | | | | || ||| | ||||||| ||||||||||| | | Sbjct 25135 TTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCAC 25194 Query 183431 AAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 ||||||| ||| || ||||| ||| | || || || |||| ||| || || || || | Sbjct 25195 AAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATG 25254 Query 183491 GTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA 183550 |||| || || || || ||||| ||| | || ||||| ||||||||||| | || Sbjct 25255 GTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAAT 25314 Query 183551 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCC 183610 | || ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 25315 TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 25374 Query 183611 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 183670 | || |||||| | ||||||||| ||||| |||||||||||||| || |||||||| | Sbjct 25375 TAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCTA 25434 Query 183671 TCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATA 183730 | ||||||||| | | || |||| || || || ||||||||| | ||||| || |||| Sbjct 25435 TATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATA 25494 Query 183731 TGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAG 183790 ||||||||||||| ||| || | || | || || || | ||||| ||||||| || | Sbjct 25495 TGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTG 25554 Query 183791 TAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCA 183850 |||| ||||| || | ||| ||||| || ||||| |||||| ||| ||| | | | Sbjct 25555 TAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAA 25614 Query 183851 CTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCG 183910 |||||| ||||| || ||||| |||||||| || || || || ||||| |||||||| | Sbjct 25615 CTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTG 25674 Query 183911 GGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGG 183970 ||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 25675 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 25734 Query 183971 GTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATT 184030 || | ||| | | || |||| | | || || || | || || ||||| ||||| | Sbjct 25735 GTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACT 25794 Query 184031 TTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGA 184090 | || || || ||| | ||||| |||||||| |||||||| || |||||||| || | Sbjct 25795 TCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAAA 25854 Query 184091 ACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGA 184150 | || || | || ||||| | ||||| ||| | || || ||||| || ||||| | Sbjct 25855 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 25914 Query 184151 ATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 | ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 25915 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATG 25963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611577942672000