Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq391 646 1e-180 seq582 601 4e-167 >seq391 Length=7892 Score = 646 bits (716), Expect = 1e-180 Identities = 725/964 (75%), Gaps = 8/964 (1%) Strand=Plus/Plus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| |||| ||||| |||||| | |||||||| || | | || || Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| || ||||| |||||||| || || || ||||||||||||||||| Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | ||||| ||||| || || || |||||| | |||| | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | ||||| || || || |||||||| ||| | | ||||| || Sbjct 6800 TTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTG 6859 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| ||||||||||| | | | || | |||||| | | ||||||||||| Sbjct 6860 GTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTG 6919 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 || |||||||||||||||||||| || ||| || |||||||||||||||||| || Sbjct 6920 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 6979 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCA 165209 |||||| || || || || || ||| | || |||||| || |||| || ||||||| Sbjct 6980 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 7039 Query 165210 AGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 165269 ||| || || ||||||||||||||||| || |||||||||||||| |||| |||| |||| Sbjct 7040 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGT 7099 Query 165270 CTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 165329 ||||| || || || ||||| |||||||| || || |||||| | || || ||||| || Sbjct 7100 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 7159 Query 165330 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCG 165389 |||||| || || || || |||||||||||| | || ||||| | || | Sbjct 7160 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 7219 Query 165390 CGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGAC 165449 || || || |||| || | ||| | ||||| | || || ||||| ||||| || Sbjct 7220 GGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 7279 Query 165450 CTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTT 165509 ||||||||||| ||||| || || || || ||||| | || |||||||| || || Sbjct 7280 TTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 7339 Query 165510 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTT 165569 |||||| || ||||| | ||||||||| | || || ||||||||| | ||||| ||||| Sbjct 7340 CAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTT 7399 Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 |||||| | ||| |||| || ||||| |||||||| |||||||||||||||||||| || Sbjct 7400 TACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATC 7459 Query 165630 TATTGTTGATAGTC-AGAAC--AAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGC 165686 | | |||||||||| || | ||| | | || |||||||| | | |||||||| Sbjct 7460 TGTAGTTGATAGTCAAGGTCGTGTAATTAAC---ACCTGGGCTGATATCATTAACCGTGC 7516 Query 165687 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGC 165746 | || |||||||||||||||||||| ||||| ||||| |||||||| || ||| | || Sbjct 7517 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGC 7576 Query 165747 TGCT 165750 |||| Sbjct 7577 TGCT 7580 >seq582 Length=29683 Score = 601 bits (666), Expect = 4e-167 Identities = 731/990 (74%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| ||||||||||| || | || |||| ||||||| | || Sbjct 24975 GACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCC 25034 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| | || || || || || || || |||||||| |||||| | || Sbjct 25035 TTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 25094 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || |||| |||| || ||||| ||||||| | || || ||||||||||| || || Sbjct 25095 AGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCGGTTTCTACTCCTGCTAATA 25152 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 166428 | | | || ||| || | | || ||||||||||| || ||||||||||| | | Sbjct 25153 GTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTT 25212 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | || || || ||| | || |||||||| || |||||||| || ||||| | Sbjct 25213 GGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATGGTGCTTTCGCACTAATAG 25272 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||| ||| | || ||||| ||| | ||||| ||| | | | || || || |||||| Sbjct 25273 GTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAATGCA 25331 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || |||||||| |||||||| || ||| ||| || || || || || | ||| Sbjct 25332 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCATTAGGT 25391 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 || || |||||||||| || || ||| || || |||| || || ||||| | || Sbjct 25392 CAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATTCTA 25451 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727 || ||||||| || || |||||||| ||||||||||||||||||||||| || || ||| Sbjct 25452 TTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGT 25511 Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787 | | || | ||| |||| | || || ||||||| ||| ||||| || ||| | | | Sbjct 25512 GTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 25571 Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847 | |||||||| ||||||||| ||| ||| || || | ||||||| |||||||| Sbjct 25572 GAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACT 25631 Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907 |||||||||||||| || ||||||| |||||| || ||||| || |||| ||| ||| Sbjct 25632 TATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 25691 Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967 || | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 25692 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 25751 Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027 | || | | ||||| || | ||||| ||||| |||||||| |||||||| ||| | Sbjct 25752 CTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 25811 Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087 | ||||| || |||||||| |||||||| ||||| ||||| || |||||||| || || Sbjct 25812 CGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAA 25871 Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147 ||||| ||| |||||||||| || ||||| |||||||| | | |||||||||| Sbjct 25872 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 25931 Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| || | || |||||||| ||| Sbjct 25932 GAGGTTCTACCCCGTGGAAACGCTCTTTAA 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563552013465600