Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq391 526 3e-144 >seq391 Length=7892 Score = 526 bits (582), Expect = 3e-144 Identities = 701/974 (72%), Gaps = 0/974 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||| ||||| ||||||||||| Sbjct 6603 TGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 6662 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 6663 ACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGAT 6722 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || || Sbjct 6723 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCG 6782 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || || | ||||| || || || |||||||| Sbjct 6783 GGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCG 6842 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||||||||| || || |||||||||||| || || | | | |||||| Sbjct 6843 GCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTC 6902 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 6903 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 6962 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 6963 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTG 7022 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||| ||| || || || || ||||||||||| ||||| ||||| Sbjct 7023 ATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 7082 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| |||||||||| || ||||||||||| |||||||||||||| || ||| Sbjct 7083 TTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATG 7142 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 7143 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTA 7202 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || ||| | || |||| |||| Sbjct 7203 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTC 7262 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || ||||| || || || ||||| || |||||| || | ||| Sbjct 7263 GGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATC 7322 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || ||||| |||| | | ||||||||| | ||| | | ||| Sbjct 7323 TTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCT 7382 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 ||| | | || ||||| ||| | |||||||| | || ||||| || ||||| || || Sbjct 7383 GTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGT 7442 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || ||||||||||| || | || ||| | ||| ||| || || ||||| || Sbjct 7443 TTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGAT 7502 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | ||||| | || ||||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 7503 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 7562 Query 170659 CCACTTGACTTGGC 170672 || || ||||| || Sbjct 7563 CCTCTAGACTTAGC 7576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582735510336000