Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq391 641 4e-179 >seq391 Length=7892 Score = 641 bits (710), Expect = 4e-179 Identities = 727/972 (75%), Gaps = 2/972 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 7564 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 7505 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| |||||||| || | ||||| ||| ||||| || | | || |||||||| Sbjct 7504 ATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAGTTG 7445 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || || || || || || ||||| || |||| ||||| ||||| ||||||||| || | Sbjct 7444 AAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGTAAACCAAATACCGATT 7385 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 7384 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 7325 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||||| || || || |||||||| || || ||||||||||| || |||||| Sbjct 7324 AAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATAAGTTTCTTCCTCTTGA 7265 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | ||| || |||||||||| ||||| | ||| | | |||| Sbjct 7264 CCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 7205 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 7204 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 7145 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| || | ||| ||||| Sbjct 7144 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGATCATAAAGTTG 7085 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || ||||| |||| || || Sbjct 7084 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGATTGGGTAG 7025 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| ||||||||||| ||||| || || |||||| ||||| ||| Sbjct 7024 ATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAATCCAAGGA 6965 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 6964 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 6905 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | || | |||| |||||| |||||||| |||| ||| || || | | Sbjct 6904 AAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAACCACTCATCAACTGAT 6845 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || || || | |||||||| ||| | |||| | ||| Sbjct 6844 GCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAATAATAGCA 6785 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 6784 CCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCA 6725 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| | | ||| || || || || ||||| ||| |||| | || Sbjct 6724 ATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACAGA-AGTTGCAGTCAATAA 6666 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| || | || | |||||| | |||| ||| | Sbjct 6665 GGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTCAGTGCTGGTTAT 6606 Query 84944 CCAATCACAGAA 84955 ||| | |||||| Sbjct 6605 CCAGTTACAGAA 6594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571163344195200