Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq391 531 2e-146 >seq391 Length=7892 Score = 531 bits (588), Expect = 2e-146 Identities = 711/989 (72%), Gaps = 0/989 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||| ||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || |||||||| || | || | || | |||||| || Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTAC 7461 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || |||||||| || ||||| || || ||||||||||| | |||| ||| || Sbjct 7460 AGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGT 7401 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | | || ||||||||||| | |||||| |||||| || || || Sbjct 7400 AAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 7341 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 7340 GAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATA 7281 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | ||| ||||||| | || ||||| Sbjct 7280 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 7221 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| |||| | || ||||| Sbjct 7220 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 7161 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 ||| || || ||||| | ||| || || || ||||||||||| ||||| || ||||| || Sbjct 7160 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 7101 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 || | |||||| |||||||| || || || || ||||||||||||||||| || || || Sbjct 7100 TACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7041 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| || | ||||||| ||||| |||||| || |||||||| || |||||||| || Sbjct 7040 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 6981 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || | |||||| || | ||||||||||||| | || |||| || Sbjct 6980 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 6921 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | ||||| | ||||| | || || |||| ||| || || || || ||||| Sbjct 6920 ACAAGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAA 6861 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 |||||| || | | ||| ||||||||||||||||| ||||| | || || || || Sbjct 6860 CCACTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGA 6801 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || || || || || |||||||| || |||| | ||| || ||||| Sbjct 6800 AGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 6741 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| ||||| || ||||| ||||| | || || || | |||| | | Sbjct 6740 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACAGA 6681 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 6680 AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTT 6621 Query 36929 GTTTGTACTTGTAACCCAGTCACATAAAC 36957 | || || || | ||||| ||| |||| Sbjct 6620 TTCAGTGCTGGTTATCCAGTTACAGAAAC 6592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150426814185760