Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq391 601 1e-167 >seq391 Length=7892 Score = 601 bits (666), Expect = 1e-167 Identities = 730/990 (74%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| |||||||| | || ||| ||||| ||| || | | ||| | ||||| || Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTAC 7461 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || |||||||| || ||||| || || ||||||||||| || |||| || || Sbjct 7460 AGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGT 7401 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 || ||| || | | || ||||||| ||| | |||||| |||||| ||| ||||| Sbjct 7400 AAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 7341 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 7340 GAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATA 7281 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || | ||| ||| | | || ||||| Sbjct 7280 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 7221 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | |||||| || | |||||||||||| || | | || ||||| Sbjct 7220 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 7161 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| ||||| | |||||| || || ||||||||||| ||||| || |||||||| Sbjct 7160 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 7101 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||||| ||||||||| |||||||||||||| || ||||||||||||||| || ||||| Sbjct 7100 TACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7041 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || |||| ||||| | || || || | ||||| | || |||||||| |||||||||| Sbjct 7040 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCC-GCTGCAACCGGAGCTGAATATG 6982 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || | | | ||||||||||||| | || |||| | Sbjct 6981 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT 6922 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | |||||| | |||| |||| || || || |||||||| | Sbjct 6921 AACAAGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATA 6862 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||| ||||| | ||| || ||||||||||| || || ||||| |||||||| || Sbjct 6861 ACCACTCATCAACTGAT--GCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGC 6804 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || || || || || || |||||||| || ||||||||||| | || Sbjct 6803 AGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 6744 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 |||||||| || || || || || ||||| || ||||||| ||| |||| |||||| | Sbjct 6743 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATAC 6684 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || |||||| || || | | || ||||| || ||||||||||| || | || || || Sbjct 6683 AGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACG 6624 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| | ||||| || | ||||| |||||| Sbjct 6623 GTTTTCAGTGCTGGTTATCCAGTTACAGAA 6594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152621611695840