Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq391 533 4e-147 >seq391 Length=7892 Score = 533 bits (590), Expect = 4e-147 Identities = 709/985 (72%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||||||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 7576 GCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 7517 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || |||||||| || | || | || | |||||| || || Sbjct 7516 GCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTACAGAT 7457 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || |||||||| || ||||| || || ||||||||||| | |||| ||| |||| | Sbjct 7456 TGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGTAAAC 7397 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | || ||||||||||| | |||||| |||||| ||| || || || Sbjct 7396 CAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 7337 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || |||||||| || Sbjct 7336 CTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATAAGTT 7277 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | ||| ||||||| | || ||||| | Sbjct 7276 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 7217 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 7216 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 7157 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || || ||||||||||| ||||| || ||||| || || Sbjct 7156 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACG 7097 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | |||||| |||||||| || || || || ||||||||||||||||| || || ||||| Sbjct 7096 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 7037 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||||| ||||| |||||| || |||||||| || |||||||| || ||| Sbjct 7036 CCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACA 6977 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| ||| Sbjct 6976 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 6917 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | || || |||| ||| || ||||| || || |||||| Sbjct 6916 GCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAACCAC 6857 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | | ||| ||||||||||||||||| ||||| | || || || ||| | Sbjct 6856 TCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTA 6797 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || || |||||||| || |||| | ||| || ||||| ||| Sbjct 6796 GGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 6737 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || ||||| ||||| | || || || | |||| | | | Sbjct 6736 CGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACAGAAGTT 6677 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 6676 GCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTCA 6617 Query 26413 GTACTTGTAACCCAGTCACATAAAC 26437 || || || | ||||| ||| |||| Sbjct 6616 GTGCTGGTTATCCAGTTACAGAAAC 6592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151965731973440