Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq391 648 0.0 seq582 524 8e-144 >seq391 Length=7892 Score = 648 bits (718), Expect = 0.0 Identities = 714/948 (75%), Gaps = 2/948 (0%) Strand=Plus/Plus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC-GCTACAATTTGCTTCATT 8346 |||| |||||||| ||| | |||||||| ||| || ||| | || || | || ||| Sbjct 6634 TCGGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACTGCAACTTCTGTATTTATT 6692 Query 8347 ACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGA 8406 | || ||| | ||||||||||| || || || || || || || ||||| ||| ||||| Sbjct 6693 ATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 6752 Query 8407 TCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATT 8466 ||||| | ||||| ||||| || || || ||||| || |||| | ||| || ||| Sbjct 6753 TCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATT 6812 Query 8467 GGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGT 8526 || | ||||| ||||| ||||||||||| || || ||||||||||| | ||||| ||| Sbjct 6813 GGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGT 6872 Query 8527 GGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGT 8586 |||||||| | || | ||| | |||||| | ||||| || | ||||||||||||| Sbjct 6873 GGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 6932 Query 8587 GAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCT 8646 || ||||||||| || ||| || || |||||||||||||| ||||||||| || ||| Sbjct 6933 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 6992 Query 8647 CCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCT 8706 || ||||| || ||| ||||||| ||| | |||| || | |||||||| || ||| Sbjct 6993 CCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCT 7052 Query 8707 GATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAG 8766 |||||||||||||| || ||||| ||||| ||||||| |||| | || |||||||||||| Sbjct 7053 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAG 7112 Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCT 8826 ||||||||||| |||||||| || |||||| | ||||| |||||||| |||||||| || Sbjct 7113 CACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 7172 Query 8827 CTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAA 8886 || ||| || ||||||||||| | || |||||| || | | || ||||| ||| Sbjct 7173 CTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 7232 Query 8887 ACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTT 8946 | || ||| ||| | || |||| ||||||||||| || |||||||| ||||| || Sbjct 7233 AATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTA 7292 Query 8947 GCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGA 9006 || |||||||| || |||||||| ||||||||||||||||| ||| ||||| ||| | Sbjct 7293 GCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGT 7352 Query 9007 AGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGC 9066 || || |||||| | ||||| |||||||| | || || |||||||| || | || Sbjct 7353 TCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGT 7412 Query 9067 GTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGA 9126 | || |||||||||||||| || || |||||||||||||| || | | || | Sbjct 7413 ATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGT 7472 Query 9127 CAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAA 9186 ||||| || || | ||||||||||| || | ||||||| || || ||||||||| Sbjct 7473 CAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAA 7532 Query 9187 GTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 || ||||| ||| | || || || |||||||| || ||| | || ||| Sbjct 7533 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 524 bits (580), Expect = 8e-144 Identities = 717/999 (72%), Gaps = 2/999 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || |||||||| ||||||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTG-AGGGTGCTAATTTCCT 9993 || || ||||| || || ||| | || ||| ||| | | ||| ||| |||||| | Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTT 25123 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || |||||| || | | | || ||| | | |||| ||||| Sbjct 25124 AACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGG 25183 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 |||||| | || || ||||| || ||| || | || || || ||| |||| || Sbjct 25184 TCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGT 25243 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || || || || || ||||| |||| || ||||||||||| ||||| || || || | Sbjct 25244 TGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCG 25303 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 || || | | || ||||| ||||| ||||| || ||||| || |||||||||||||| Sbjct 25304 ATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 25363 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||||| || |||||| | || |||||| ||||||| ||||| || ||||| || Sbjct 25364 TTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGG 25423 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || || || || || | ||| |||| || | || || |||||||| |||||||| || Sbjct 25424 TGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAA 25483 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 || || ||||||||||||||||| ||| || |||| | || || |||| || || || Sbjct 25484 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 25543 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | ||||||||||| || | | | | ||||| || ||||| || ||| || Sbjct 25544 TGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGC 25603 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | ||||||| ||||| || ||||| |||||||| |||||||| || ||||| Sbjct 25604 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 25663 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 ||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 25664 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 25723 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||| || | ||| | |||| | || |||| | | ||||| || | || || || Sbjct 25724 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACG 25783 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 ||| || || || || || || || ||| | || | ||||||||||||||||| || || Sbjct 25784 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTT 25843 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 ||| || || ||||| || | ||||||||| ||||||| |||||||| | || || Sbjct 25844 CTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 25903 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 25904 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 25942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516380319360000