Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq391 527 2e-145 >seq391 Length=7892 Score = 527 bits (584), Expect = 2e-145 Identities = 719/997 (72%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 17828 GATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCC 17887 ||| | |||||| ||||| |||||||||||||||||||| || ||||||||||| | || Sbjct 7583 GATAGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACC 7524 Query 17888 AAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGC 17944 ||||||||| | ||| | | |||||||| || | || | ||| | | | | Sbjct 7523 AAGGTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAAC 7464 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 |||| ||||||||||||||||| || || || || ||||||||||| || |||| Sbjct 7463 TACA---GATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAA 7407 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || |||| ||| || | | || ||||||||||| |||||||| |||| | | Sbjct 7406 AGCAGTAAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGA 7347 Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 7346 GTTGTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGAT 7287 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 ||||| || ||||| ||||| || ||| | || || | ||| ||| ||| || || Sbjct 7286 GTTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGT 7227 Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244 ||||| || || | ||||| || | || ||||||||| |||| | || Sbjct 7226 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 7167 Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304 |||||||| || || ||||| | ||| || || || ||||||||||| ||||| || || Sbjct 7166 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 7107 Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 |||||||||| ||| || ||||||||||| || || ||||||||||||||||| || Sbjct 7106 CTGGAATACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 7047 Query 18365 ACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCG 18422 || ||||| || | || || | | ||||| || | || || | ||||| || || || Sbjct 7046 GCTTCCTTGACCGATTGGGTAGATCAAGAAA-ACAGCAGTAGCC-GCTGCAACCGGAGCT 6989 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| || |||||||| || | ||||||||||||| | || Sbjct 6988 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 6929 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 ||||| ||| || | || | | ||||| | || || |||| ||| || || || Sbjct 6928 CCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCA 6869 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || ||||||||||| || | | ||| ||||||||||||||||| ||||| | || || Sbjct 6868 TTGTATAACCACTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATA 6809 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | || | || || || || || || |||||||| || |||| | ||| Sbjct 6808 GCTGCAGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCA 6749 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || ||||| |||||||||||||| || || || ||||||||||| | || || || | | Sbjct 6748 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATA 6689 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782 ||| | | || ||| || || | | ||||||||| | || |||||||| || | ||| Sbjct 6688 AATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAA 6629 Query 18783 AGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 || ||||| | || || || | ||||| ||| |||| Sbjct 6628 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 6592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151290655771360