Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq582 554 6e-153 seq391 551 7e-152 >seq582 Length=29683 Score = 554 bits (614), Expect = 6e-153 Identities = 733/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 25957 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 25898 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || |||||||| || Sbjct 25897 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTT 25838 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 25837 TCAAATTCAGGATCTTCAGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 25778 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | || ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 25777 TTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 25718 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 25717 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 25658 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || ||||||||||||||||| ||||| |||| || | | || || | Sbjct 25657 AAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCCCGG 25598 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||| ||| | | ||| || || ||||| |||| || || Sbjct 25597 AATGTATTTGCCCCATCACCATCCTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 25538 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| |||||||| ||| Sbjct 25537 GCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAGC 25478 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||||||||| || || || | || || | |||||||||||| ||||| |||||||| Sbjct 25477 GTCCAGTTATGAAACCCTTGAAAAAATAGAATGAATCTAAATATAGCTGCTACACCAAAA 25418 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||| ||||||| ||||| || | ||||| || || || ||| |||||| Sbjct 25417 CTAGGTGCAAAAAACCAACCAGACTGACCTAATGGATAAATTAGGAATACAGAAACAAAA 25358 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 25357 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCAATTGAACAGATCGAGCA 25298 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | ||||| ||||| | ||| ||||| || || || || ||||| || ||||| || ||| Sbjct 25297 AGTTCGAACTGACGTAACATAAAACCTATTAGTGCGAAAGCACCATGAAGAGCAACGAAA 25238 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||| ||||| |||||||||||||| Sbjct 25237 GTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCAGGACCCCAT 25178 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | ||| || | | | | |||||| || || || || || || | |||| Sbjct 25177 AGTAACAATAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACCGCTGCGGTTAAGAAA 25118 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | ||| | || | || ||||||||||| ||||| |||| || Sbjct 25117 TT-GCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTACAAAGGT 25059 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 || || |||| ||| || || | |||| ||||||| ||||| || | ||| ||||| Sbjct 25058 TGTACCCGTAAACCAACCTCCTAAGGCGAAATAAGCACAAGGAAAGAGCAATAGACCAGA 24999 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 24998 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 24945 >seq391 Length=7892 Score = 551 bits (610), Expect = 7e-152 Identities = 699/964 (73%), Gaps = 8/964 (1%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| | ||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| ||||| | | || ||||||||||| | |||||||| |||| ||||| | Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTAC 7461 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||||||||| ||||| |||||||| ||||| || |||| ||| | || || Sbjct 7460 AGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGT 7401 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||| ||||| | ||| || | |||||||| Sbjct 7400 AAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 7341 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || |||||||||||||| ||||| || ||||||||||| ||||||||||| || Sbjct 7340 GAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATA 7281 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| ||||| ||||||| | ||| ||||||| |||| || || || Sbjct 7280 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 7221 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | || | || |||| ||||| ||||||||||| || || || || |||| Sbjct 7220 CCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGGGAGCCGCCGA 7162 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | |||||| || |||||||| || ||||| || || || |||| Sbjct 7161 ATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 7102 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | ||| ||||||| || || || || || | ||||||| |||| || || | Sbjct 7101 ATACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTC 7042 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||| | ||||||| |||||| || || | || || ||||| ||||| || |||| Sbjct 7041 CTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATG 6982 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| || ||||| ||||||||| | | |||||||||||| ||||||| Sbjct 6981 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT 6922 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | |||| | |||||| | || | |||| |||||||||| || || | Sbjct 6921 AACAAGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATA 6862 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||||||||||| ||||| |||||||| || || || ||||| | ||||| || || Sbjct 6861 ACCACTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGC--TGC 6804 Query 103950 AGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007 || || |||| || ||||| || || || ||||| ||||| | || || |||| || Sbjct 6803 AGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 6744 Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066 ||||||||||| || || ||||| || ||||| || |||| ||| || | || || | Sbjct 6743 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATAC 6684 Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126 ||| ||||| | ||| | || |||||||||| ||||| ||||| || | || |||| Sbjct 6683 AGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGAC 6625 Query 104127 GGTT 104130 |||| Sbjct 6624 GGTT 6621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633391331875200