Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq391 495 1e-135 >seq391 Length=7892 Score = 495 bits (548), Expect = 1e-135 Identities = 700/981 (71%), Gaps = 6/981 (1%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || |||||||| || || || || |||||||| || || | |||||||| ||||| Sbjct 7571 GTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACG 7512 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| || |||||||||||||| || || | || | | | | | | ||||||||| Sbjct 7511 GTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTACAGATTGGTT 7452 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 ||||||||||| || | |||||||||||| ||| | || | |||| ||||||||| Sbjct 7451 GAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGTAAACCAAAT 7392 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 ||| | |||||||| ||||| | ||||| || | | ||| || || || || ||||| Sbjct 7391 ACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGC 7332 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | ||||||||||| || |||||||| || || || ||||| ||||| Sbjct 7331 ATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATAAGTTTCTTC 7272 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||||||||| || ||||||| | ||| || | | ||| || || || | || | Sbjct 7271 CTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 7212 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || |||| | ||| ||||||||| || | || || ||||| || || Sbjct 7211 ACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGC 7152 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 ||||| | ||||||||| || |||||||| || ||||||||||||||||| || | ||| Sbjct 7151 TACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACGATCAT 7092 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 ||||||| || || || || || | |||||| |||||||||| || || || | Sbjct 7091 AAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCGAT 7032 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || || | | ||| |||||||| || || || || ||||| || || |||||| || Sbjct 7031 TGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACAGCAAT 6972 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| || | ||| || || || | |||||||||||||| || ||||| ||| | || Sbjct 6971 CCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTAC 6912 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | |||||| | ||| | |||| | ||||| || ||||| | ||| ||||| Sbjct 6911 ACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAACCACTCATC 6852 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || || || |||||||| |||||||| ||||| | || || || | | |||| Sbjct 6851 AACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTAGGAAT 6792 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | || || || || || ||||| || || | || || |||| || ||||| || || Sbjct 6791 AATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAAT 6732 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGTTGTAGC 22372 ||||| || || || || || || | | ||||| |||||||| | |||||| | Sbjct 6731 ACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACAGAAGTTGCA-- 6674 Query 22373 GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 | ||| ||| | || ||||| | || || |||||||| | ||||||||||| | ||| Sbjct 6673 GTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTCAGT 6615 Query 22433 AGAGGTGACCCAGGAACAAAA 22453 ||| | |||| ||| || Sbjct 6614 GCTGGTTATCCAGTTACAGAA 6594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146181192763200