Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq391 509 2e-139 seq582 318 7e-82 >seq391 Length=7892 Score = 509 bits (564), Expect = 2e-139 Identities = 705/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| |||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 7576 GCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 7517 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | | |||| |||| || | | || | | |||||| || ||| Sbjct 7516 GCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTACAGAT 7457 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| ||||||||||| || | |||||| ||||| || | ||||||| || || ||| Sbjct 7456 TGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGTAAAC 7397 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || | ||||| || | |||| ||||||||| | | | ||||||||||| Sbjct 7396 CAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 7337 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | |||||||| ||||| || || ||||| ||||| || ||| Sbjct 7336 CTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATAAGTT 7277 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| | ||| || || | ||||| ||||| ||| Sbjct 7276 TCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCTG 7217 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || |||| || || ||||| | Sbjct 7216 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 7157 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || || ||||| || ||||| ||||| || ||||| ||| Sbjct 7156 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACG 7097 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | |||||||||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 7096 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 7037 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | ||||| ||||| || || | || || |||||||| |||||| Sbjct 7036 CCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAACA 6977 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||||||||| || | | | | |||||||||| | ||||| || Sbjct 6976 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 6917 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||||| | |||||| | || | | | ||||||||||||||| || ||||| Sbjct 6916 GCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAACCAC 6857 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 |||||||| | ||| ||||||||||||||||| ||||| | || ||||| || | Sbjct 6856 TCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGAAGTA 6797 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || ||||| || || || ||||| || || | | ||| || | || ||||| Sbjct 6796 GGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCA 6737 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGC 124947 | || || || ||||| || ||||| || || || || || | || || ||| | | Sbjct 6736 CGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACA-GAAGT 6678 Query 124948 TGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 ||| || | |||| || ||||| | |||||||||||| || | |||| | ||| | Sbjct 6677 TGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTC 6618 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||| ||| | |||||| Sbjct 6617 AGTGCTGGTTATCCAGTTACAGAA 6594 >seq582 Length=29683 Score = 318 bits (352), Expect = 7e-82 Identities = 693/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 25961 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 25902 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 25901 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAA 25842 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 25841 AGTTTCAAATTCAGGATCTTCAGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 25782 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | || ||||| || | || | || |||| | ||| | || || || Sbjct 25781 TAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 25722 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 25721 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 25662 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || |||| ||| |||||||||||| | || || || | || || Sbjct 25661 CCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 25602 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| || ||| || | ||| | || || Sbjct 25601 CCGGAA---TGTAT-TTGCC-----CCATCACCAT------------CCTCAAATAAAGT 25563 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || | || || ||||| Sbjct 25562 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAAC 25503 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||| || ||| || || ||||| | |||| || | Sbjct 25502 TCCCATCATATGAAATGGGTTCAGCGTCCAGTTATGAAACCCTTGAAAAAATAGAATGAA 25443 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 | ||| || ||||| ||||| || ||||| || ||||||| |||||||| ||| Sbjct 25442 TCTAAATATAGCTGCTACACCAAAACTAGGTGCAAAAAACCAACCAGACTGACCTAATGG 25383 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | || || || || | |||||||||||| ||| || || Sbjct 25382 ATAAATTAGGAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 25323 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| || || | || || || | | ||| |||||||| ||| | Sbjct 25322 AGGGCGCAATTGAACAGATCGAGCAAGTTCGAACTGACGTAACATAAAACCTATTAGTGC 25263 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | ||||| | || || || |||| || || || | ||| |||||||| || Sbjct 25262 GAAAGCACCATGAAGAGCAACGAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAA 25203 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 |||||||||||||| ||||| || |||| | | || | | | | |||| Sbjct 25202 ATCCCCTTGTGCTTCAGGACCCCATAGTAACAATAAAGAGTGTGCTAAACTATTAGCAGG 25143 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || || ||||| |||||||| || || || | ||| ||| || | ||||| Sbjct 25142 AGTAGAAACCGCTGCGGTTAAGAAATTGCAGCCTTCCAAATAAGAACTGGCCAATCCATG 25083 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || || |||||||| || | | | ||| || Sbjct 25082 GGTATACCATGAAGTTACAAAGGTTGTACCCGTAAACCAACCTCCTAAGGCGAAATAAGC 25023 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || ||||| || ||| |||||| Sbjct 25022 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCA 24963 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 24962 GTCATCCATAATATCAAA 24945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578886653308800