Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq391 596 2e-165 seq582 544 1e-149 >seq391 Length=7892 Score = 596 bits (660), Expect = 2e-165 Identities = 727/989 (74%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| | || | || || ||||| || || | ||| || || || || | ||||| Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 ||||||||| | | || ||||| ||||| | |||||||| || ||||| || Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTAC 7461 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||||||||||||||| || ||||||||||| || | ||| | || || Sbjct 7460 AGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGT 7401 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 ||||| || || | || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 7400 AAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 7341 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| |||||||||||||||||| ||||| || || ||||| || || |||||||| || Sbjct 7340 GAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATA 7281 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 || ||||| ||||||||||| | ||||| | ||| || ||| |||| || || || Sbjct 7280 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 7221 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| || || || || ||||| Sbjct 7220 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 7161 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || |||||||||||||| ||||| || |||||||| Sbjct 7160 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 7101 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||| | ||| |||| |||||||||||||| || ||||||||| |||| || || || Sbjct 7100 TACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7041 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||||| || |||| | ||| || ||| | || || || || ||||| |||||||| Sbjct 7040 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 6981 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| ||||||||||| | ||| | |||||||||||||| |||||||| Sbjct 6980 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 6921 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | |||| |||||||||| || || || Sbjct 6920 ACAAGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAA 6861 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||||||||| | |||||| ||||||||||||||||| ||||| | || || || || Sbjct 6860 CCACTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGA 6801 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || ||||| ||||| || ||||| || || | || || |||| ||| || Sbjct 6800 AGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGG 6741 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 |||||||||||| |||||||| || || || || || ||||| || | ||| || |||| Sbjct 6740 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACAGA 6681 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||| ||||| || | || | ||||| Sbjct 6680 -AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGT 6622 Query 27689 TGTTAGTTGATGTCACCCACTCACAGAAA 27717 | | ||| || | ||| | ||||||| Sbjct 6621 TTTCAGTGCTGGTTATCCAGTTACAGAAA 6593 >seq582 Length=29683 Score = 544 bits (602), Expect = 1e-149 Identities = 737/1021 (72%), Gaps = 6/1021 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 25962 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 25903 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 25902 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 25843 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | || ||| | | ||||||||| ||||| || || || || || ||||| |||| Sbjct 25842 AAGTTTCAAATTCAGGATCTTCAGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 25783 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | || || || | | |||| || | | ||| | ||| | || || | Sbjct 25782 GTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 25723 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||||| | Sbjct 25722 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 25663 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || |||||||| ||||| || || || | ||||| | | || | Sbjct 25662 ACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 25603 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || |||||| || ||||| ||| | | ||||| || |||||| | |||| Sbjct 25602 CCCGGAATGTATTTGCCCCATCACCATCCTCAAATAAAGTATTTTCTACAGTAGCACCAT 25543 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | |||| || ||| ||||||||||||||||| || |||| Sbjct 25542 GAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 25483 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | ||||||||||||||||| || || | || |||| ||| || || || || || |||| Sbjct 25482 TCAGCGTCCAGTTATGAAACCCTTGAAAAAATAGAATGAATCTAAATATAGCTGCTACAC 25423 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| || ||||| |||||| ||||| || || ||||| || ||||||||||| | Sbjct 25422 CAAAACTAGGTGCAAAAAACCAACCAGACTGACCTAATGGATAAATTAGGAATACAGAAA 25363 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGA- 24044 | || |||||||| |||||||| || || || ||||| || || || | | || ||| Sbjct 25362 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCAATTGAAC-AGAT 25304 Query 24045 CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCA 24104 || || ||||| ||||||||||||||||||||||| ||||| || ||||| || |||||| Sbjct 25303 CGAGCAAGTTCGAACTGACGTAACATAAAACCTATTAGTGCGAAAGCACCATGAAGAGCA 25244 Query 24105 ACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGA 24164 || || | ||| || || || | ||| ||| || ||| |||||||| | |||||| Sbjct 25243 ACGAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCAGGA 25184 Query 24165 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGT- 24223 ||||| |||| | | ||| || | | | | |||||| || || || ||||| || Sbjct 25183 CCCCATAGTAACAATAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACCGCTGCGGTT 25124 Query 24224 AAGAAAGTTAGCACCCT-CAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAA 24282 |||||| | ||| ||| | | ||| ||||| || | ||||||||| ||||| || | Sbjct 25123 AAGAAATT--GCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTA 25066 Query 24283 CAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGA 24342 |||| | ||| || |||| |||||| || | ||| | ||||||| |||| || | | Sbjct 25065 CAAAGGTTGTACCCGTAAACCAACCTCCTAAGGCGAAATAAGCACAAGGAAAGAGCAATA 25006 Query 24343 GTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAA 24402 | ||||||||||| ||||| || || || |||| | |||||| |||| || |||| Sbjct 25005 GACCAGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAA 24946 Query 24403 A 24403 | Sbjct 24945 A 24945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665365959580800