Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq391 535 5e-147 >seq391 Length=7892 Score = 535 bits (592), Expect = 5e-147 Identities = 705/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 7576 GCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 7517 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | ||| | | |||||| || ||| Sbjct 7516 GCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTACAGAT 7457 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| ||||| || ||||| ||||| || ||||| || | |||||||| || ||| ||| Sbjct 7456 TGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGTAAAC 7397 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 |||| || | || || | | ||| | ||||||||| | | | | |||||| ||| Sbjct 7396 CAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 7337 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| |||||| || ||||||||||| || || ||||| || Sbjct 7336 CTA-GCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATAAGT 7278 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | ||| ||| || | ||| || || || || Sbjct 7277 TTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTCCCT 7218 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| ||||||||||| || || || || ||||| | Sbjct 7217 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 7158 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 7157 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 7098 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 || ||| ||||| || |||||||| || ||||||||||| |||||||| || || || Sbjct 7097 GATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 7038 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||| | ||| || | ||||| || || ||| || | || ||||| |||||| || Sbjct 7037 ACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGCAAC 6978 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGC 8549 | ||||| || | |||||| | ||| | | ||||||| | |||||| ||| Sbjct 6977 AGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 6918 Query 8550 AGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCA 8609 || | |||| | |||||| | | | | | ||| ||||| || || || ||||| Sbjct 6917 AGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAACCA 6858 Query 8610 CTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGA 8669 |||||| | || || |||||||| || || || ||||| || |||||||| |||| Sbjct 6857 CTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAGAAGT 6798 Query 8670 TGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTC 8729 |||| | |||||| || || || |||||||| || | | || || | ||||||||| Sbjct 6797 AGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTC 6738 Query 8730 ACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGC 8789 ||||||||| || ||||| || || |||||||| || || || | ||||| || || Sbjct 6737 ACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACAGAAGT 6678 Query 8790 AGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTT 8849 |||| || ||| ||| ||||| | ||| |||||||| |||| ||||| | ||| | Sbjct 6677 TGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGGTTTTC 6618 Query 8850 TGTACTTGTAACCCA 8864 || || || | ||| Sbjct 6617 AGTGCTGGTTATCCA 6603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615743538556800