Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq391 495 1e-135 >seq391 Length=7892 Score = 495 bits (548), Expect = 1e-135 Identities = 700/981 (71%), Gaps = 6/981 (1%) Strand=Plus/Plus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCA 41350 ||||| || | ||| ||| | | |||||| | |||||||| ||||| | | || Sbjct 6654 ATGATCCC-TACCTTATTGAC--TGCAACTTCTGTATTTATTATAGCCTTCATAGCTGCT 6710 Query 41351 CCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAAC 41410 || || || || || ||||| || || ||||| || |||| || || | || || ||| Sbjct 6711 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAC 6770 Query 41411 AACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCA 41470 || || || || || || | |||| | | || || || | ||||| |||||| Sbjct 6771 AATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCA 6830 Query 41471 ATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACC 41530 || |||||||| || || ||||||| ||| | ||||| || ||||| | |||| | | Sbjct 6831 ATCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATC 6890 Query 41531 GTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTAT 41590 || | |||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 6891 GTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 6950 Query 41591 CGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACT 41650 || || || ||| | || ||||| |||||| || || ||||| || || || || ||| Sbjct 6951 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7010 Query 41651 GCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGG 41710 ||||| ||| | | || || | || || || |||||||||| |||||| | || Sbjct 7011 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7070 Query 41711 ATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCAT 41770 || || || || ||||||| ||| | || ||||||||||||||||| || |||||||| Sbjct 7071 ATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCAC 7130 Query 41771 CCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCAC 41830 || ||||||||| | ||||| || || ||||| || || | || ||||||||| Sbjct 7131 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 7190 Query 41831 GGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTAT 41890 ||| | |||| || || | || | || || || ||| | | || ||| | Sbjct 7191 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 7250 Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||||||||| ||||| || || || |||||||| || |||||| Sbjct 7251 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTT 7310 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 ||||| | ||||||||||||||||| || || || || ||| | | || ||||| | Sbjct 7311 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 7370 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| | |||||||||||| |||| | || | ||| ||||||||| Sbjct 7371 GCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTC 7430 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 ||| | || ||||||||||| ||||||||| | | | | | | || | || || ||| Sbjct 7431 AACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAC 7490 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 ||||||||||| || |||||||||| |||||||| | || || |||||||| || || Sbjct 7491 ACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 7550 Query 42191 GCACACAACTTCCCGCTTGAC 42211 || || |||||||| || ||| Sbjct 7551 GCTCATAACTTCCCTCTAGAC 7571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146187591589760