Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq391 522 8e-144 >seq391 Length=7892 Score = 522 bits (578), Expect = 8e-144 Identities = 714/989 (72%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| | || |||||| Sbjct 6585 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTT 6644 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | |||| || | ||| |||||| | || |||| Sbjct 6645 GGTGTTTTGATGAT-CCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCA 6702 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 6703 TAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 6762 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || || ||||| | | |||| | || ||||| | || | Sbjct 6763 ACGGAAACAATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACT 6822 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | ||||||||||| | |||| || ||| | |||||||| || |||||| Sbjct 6823 TTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 6882 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || |||| | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 6883 AACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 6942 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || || || || | Sbjct 6943 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAG 7002 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||| ||| | || ||||| ||||| ||||| |||| Sbjct 7003 CGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGC 7062 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||| ||| | || ||||||||||| || ||||| | Sbjct 7063 CTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCC 7122 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||| | ||||| || || ||||| || || || | || | Sbjct 7123 TTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTG 7182 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 7183 CTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 7242 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 || | || |||| |||||||||||||| || ||||||||||| || || || |||| Sbjct 7243 CTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATG 7302 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCAC 43056 |||| ||||| || | |||||||||||||| | |||| || || ||| ||||| ||| Sbjct 7303 GTTATTTTGGTCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACAC 7361 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| || | || |||||||| ||| || | || | |||||| Sbjct 7362 TTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACT 7421 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | || ||||| ||||| |||||||| | ||||||| ||| || | Sbjct 7422 ATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT 7481 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || || ||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 7482 GTAATTAACACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 7541 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || ||||| ||||||||||| || || Sbjct 7542 GAACGTAATGCTCATAACTTCCCTCTAGA 7570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143506483261120