Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq391 535 1e-147 >seq391 Length=7892 Score = 535 bits (592), Expect = 1e-147 Identities = 715/989 (72%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||||||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| | ||||||||| || ||| || ||| | | || ||||| Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTAC 7461 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| ||||| ||||| || ||||| |||||||||||| ||||||| | || Sbjct 7460 AGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGT 7401 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || ||| || || || || || ||||| | | |||||||||| | ||| ||||| Sbjct 7400 AAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 7341 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || |||||| ||||| || ||||||||||||||||| Sbjct 7340 GAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATA 7281 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | ||| |||||| |||| ||||| || Sbjct 7280 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 7221 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| || | | || ||||||||| ||| | | || || || Sbjct 7220 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 7161 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || || || | ||| || ||||||||||| || |||||||| || || ||||| Sbjct 7160 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 7101 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 || | ||| |||||||| || ||| |||||||| ||||||||||||||| || || Sbjct 7100 TACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7041 Query 41069 CTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 ||||||| ||| || | ||||| ||||| ||| |||| | ||||||| ||||| Sbjct 7040 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 6981 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTA 41188 ||| ||||| || | |||||| || | | | ||||||||||| | ||| || Sbjct 6980 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 6921 Query 41189 TGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 ||||| || | ||| ||||| | || || |||| ||| || || || ||||||| Sbjct 6920 ACAAGCTACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATTGTATAA 6861 Query 41249 CCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 |||||| || | || ||||| |||||||||||||||| || || | || || || || Sbjct 6860 CCACTCATCAACTGATGCCG-CTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGCAG 6802 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | |||| | ||| || || ||||||||||| ||||| | || || || ||||| | Sbjct 6801 AAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAG 6742 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | ||||| || ||||| |||||||| || || || || || ||||| || || || ||| Sbjct 6741 GTTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATACA- 6683 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | || ||||| | ||| | || ||||| | ||||||||||| || | ||| || ||| Sbjct 6682 GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGG 6623 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || ||||| || | ||||||||| || Sbjct 6622 TTTTCAGTGCTGGTTATCCAGTTACAGAA 6594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143676052164960