Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq391 628 3e-175 >seq391 Length=7892 Score = 628 bits (696), Expect = 3e-175 Identities = 735/990 (74%), Gaps = 12/990 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| | ||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||| || ||| || || |||| ||||| Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTAC---ACGACCTTGACTATCAAC 7464 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||||||||||||||| |||||||| |||||||| | ||||| || Sbjct 7463 TACAGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGC 7404 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||| ||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 7403 AGTAAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTT 7344 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| ||||| || || ||||||||||| || ||||| Sbjct 7343 GTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTT 7284 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | ||| || || | || || || Sbjct 7283 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGT 7224 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | |||||| || | ||||| |||||||||||||| || || || || Sbjct 7223 TTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCC 7164 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || || Sbjct 7163 GAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 7104 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| |||| ||| |||| ||||||||||| || || |||||||| | ||||| || Sbjct 7103 GAATACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCT 7044 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||||| || |||| |||||| ||||| || || | || ||||| || || Sbjct 7043 TCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATA 6984 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || ||||||||||| |||||| Sbjct 6983 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 6924 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | |||| |||| |||||||| Sbjct 6923 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACGATTAGTTCATAAGGACCACCATT 6867 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||||||||| | | ||| ||||||||||| || || ||||| | || || || Sbjct 6866 GTATAACCACTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGC 6807 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||| ||||| || ||||| ||||| | || || || | Sbjct 6806 TGCAGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGA 6747 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 ||||||||| | |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 6746 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAA 6687 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGAT 68311 || | ||| | | ||| ||| |||||||| ||||| ||||| || | || | Sbjct 6686 TACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCGATGTAAAG 6627 Query 68312 GCGATTGTCAACTGAGGTGACCCAGTTACA 68341 || || ||| ||| | ||||||||| Sbjct 6626 ACGGTTTTCAGTGCTGGTTATCCAGTTACA 6597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566837779190400