Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq391 693 0.0 seq582 581 4e-161 seq389 95.1 1e-14 >seq391 Length=7892 Score = 693 bits (768), Expect = 0.0 Identities = 741/972 (76%), Gaps = 10/972 (1%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| | ||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 7580 AGCAGCTAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 7521 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| ||||| | | || |||||||| | || ||| |||||||| | Sbjct 7520 GTTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGACCTTGACTATCAACTAC 7461 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| ||||||||||||||||| || |||||||| ||||| || |||| ||| | ||||| Sbjct 7460 AGATTGGTTGAAGTTGAAACCGTTTAGGTTGAAAGCCATAGTACTAATACCCAAAGCAGT 7401 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||| ||||| | |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 7400 AAACCAAATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTGTT 7341 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||||| ||||| || || ||||| ||||| || ||||| || Sbjct 7340 GAAACTAGCATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATGTTATA 7281 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||||||||| ||||||| | ||| || ||| |||| |||||||| Sbjct 7280 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCGTTAGCAGATTCATTTTCTGTGGTTTC 7221 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || |||||| |||| |||||||||||| ||||| || || || || || || Sbjct 7220 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAA 7161 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| || || | ||| || || |||||||| |||||||||||||| || ||||| Sbjct 7160 TACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 7101 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||||||| || || |||||||| | ||||| || || Sbjct 7100 TACGATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7041 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||||| || |||| || ||| || || | || |||||||| || || || ||||| Sbjct 7040 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 6981 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| ||||||||||||||||| ||||| | ||||||||| ||||| ||||| || Sbjct 6980 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 6921 Query 68499 TGCAAAGATACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCACCATTGTA 68555 | | ||||| | |||||| || ||||| ||| |||||||||||||||| Sbjct 6920 ACAAGCTACACCAAGTAAGAAGTGTAGAACGATTA---GTTCATAAGGACCACCATTGTA 6864 Query 68556 CAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATT 68615 ||||||||||||| | ||| |||||||| || || |||||||| | ||||| || Sbjct 6863 TAACCACTCATCAACTGATGCCGCTTCCCAGATTGGGTAAAAGTGCAACCCAATAGCTGC 6804 Query 68616 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAAC 68675 ||| |||||| || |||||| ||||| || ||||| || || || || || |||| ||| Sbjct 6803 AGAAGTAGGAATAATAGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAAC 6744 Query 68676 AGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-AC 68734 |||||||||||||||||| || || || || |||||||| |||||||| | || || || Sbjct 6743 AGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCTATGAAGGCTATAATAAATAC 6684 Query 68735 AGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGG 68793 ||| ||||| | ||| || ||||||||||||| || || ||||| || | |||||| Sbjct 6683 AGA-AGTTGCAGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGA 6626 Query 68794 CGGTTCTCTGTG 68805 ||||| || ||| Sbjct 6625 CGGTTTTCAGTG 6614 >seq582 Length=29683 Score = 581 bits (644), Expect = 4e-161 Identities = 737/1008 (73%), Gaps = 4/1008 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 25962 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 25903 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || ||||||| Sbjct 25902 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 25843 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 25842 AAGTTTCAAATTCAGGATCTTCAGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 25783 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | || ||||| | | || | | ||| |||| | ||| | || || | Sbjct 25782 GTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 25723 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 25722 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 25663 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || ||||||||||| ||||||||||| ||||||| | || || | Sbjct 25662 ACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 25603 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||| ||| | | |||||| ||||| ||| |||||| Sbjct 25602 CCCGGAATGTATTTGCCCCATCACCATCCTCAAATAAAGTATTTTCTACAGTAGCACCAT 25543 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| ||| | |||| | ||| || || |||||||||||||| |||| Sbjct 25542 GAATAGCGCATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGT 25483 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||||||||| || ||||| | || |||| ||||| ||| || |||| || | Sbjct 25482 TCAGCGTCCAGTTATGAAACCCTTGAAAAAATAGAATGAATCTAAATATAGCTGCTACAC 25423 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || |||||||||| || ||||| | || || || || || ||| || Sbjct 25422 CAAAACTAGGTGCAAAAAACCAACCAGACTGACCTAATGGATAAATTAGGAATACAGAAA 25363 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || ||||||||||| || || ||||| || || || | | || ||| Sbjct 25362 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCA-ATTGAACAGAT 25304 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || ||||| ||||| || | ||| ||||| ||||| |||||||| || || || || Sbjct 25303 CGAGCAAGTTCGAACTGACGTAACATAAAACCTATTAGTGCGAAAGCACCATGAAGAGCA 25244 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 || ||| |||| || || || | ||| ||| || |||||||| || | |||||| Sbjct 25243 ACGAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCAGGA 25184 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | ||| || | | | || |||||| || || || || || || Sbjct 25183 CCCCATAGTAACAATAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACCGCTGCGGTT 25124 Query 67425 AGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | ||||| ||| || || | |||| | || | ||| || || ||||| || || Sbjct 25123 AAGAAATT-GCAGCCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTAC 25065 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 ||| || ||||| |||| ||| || || | || | ||||||| ||||| || | ||| Sbjct 25064 AAAGGTTGTACCCGTAAACCAACCTCCTAAGGCGAAATAAGCACAAGGAAAGAGCAATAG 25005 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||||||||||| ||||| || || || || | | ||||||||| Sbjct 25004 ACCAGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 24957 >seq389 Length=5342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| ||||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 3550 CTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTG 3609 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 3610 AGCTACTGAGGA 3621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571943993500800