Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq391 652 0.0 seq582 616 2e-171 >seq391 Length=7892 Score = 652 bits (722), Expect = 0.0 Identities = 739/988 (75%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 || ||| ||||| | ||| ||| | |||||||| || |||| ||||| ||||| || Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCC 150958 ||||| || || | ||| | ||||| | || || | || ||||| |||||||| Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATAGCTGCTCCT 6713 Query 150959 CCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAAC 151018 || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||||| Sbjct 6714 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 6773 Query 151019 ATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATC 151078 || || || |||||| || ||||| ||||| ||||| || ||||||| || || ||| Sbjct 6774 ATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAATC 6833 Query 151079 TGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTC 151138 |||||||| || || | ||||| ||| | ||||| |||||||||| |||| | || Sbjct 6834 TGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGTT 6893 Query 151139 TTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACCGC 151198 | |||||| | ||||| | | ||| |||||||||||||||||||| || ||| Sbjct 6894 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 6953 Query 151199 TTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGC 151257 ||||||||||||| ||||| ||| |||||||| || ||||| ||||| || || | ||| Sbjct 6954 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGC 7012 Query 151258 AGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTAT 151317 || ||| | |||| || |||||||||| || ||||||| ||||| || || || Sbjct 7013 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7072 Query 151318 TTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACCC 151377 ||||| || ||||||| ||| | || ||||| || ||||||||||| || |||||||| Sbjct 7073 CTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 7132 Query 151378 CTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACGG 151437 || || ||| | ||||| |||||||| ||||| || || || || || ||||| || Sbjct 7133 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 7192 Query 151438 TTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATGG 151497 ||| |||| |||||| || | | || ||||| ||||| || || ||| | || Sbjct 7193 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGG 7252 Query 151498 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTGG 151557 ||||| ||||||||||| ||||| || || |||||||| || || || ||||| ||||| Sbjct 7253 TTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTGG 7312 Query 151558 TCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 151617 ||| | ||||||||||| ||| |||||||| || ||||| | ||||||||| | || Sbjct 7313 TCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGC 7372 Query 151618 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAA 151677 || |||||||| ||||||| ||||| ||||| | ||| | || || ||||| ||||| Sbjct 7373 TGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCAA 7432 Query 151678 CCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACAC 151737 ||| |||||||||||||||||||| || | | ||| |||| || || | ||||| Sbjct 7433 CCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACAC 7492 Query 151738 CTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 151797 |||||| || | | |||||||| || ||||||||||||||||| || |||||||| Sbjct 7493 CTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 7552 Query 151798 TCACAACTTCCCTCTCGACCTTGCTGCT 151825 ||| ||||||||||| ||| | |||||| Sbjct 7553 TCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 616 bits (682), Expect = 2e-171 Identities = 750/1016 (74%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| ||||||||||||||||| ||||||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||||||| | || | || |||||| |||| || || || || Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCT 152537 | || |||||||| || || ||||| ||||| ||| |||| ||| |||| ||||| Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCT 25122 Query 152538 TA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 152596 || | || || ||||||||||| || || | | | || ||| | || | || |||| Sbjct 25123 TAACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGG 25182 Query 152597 GTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTG 152656 ||||||| || ||||||||||| | ||| ||| | || || || ||| |||| | Sbjct 25183 GTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCG 25242 Query 152657 TGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 152716 | || || || || |||||||| ||||| ||||| ||| | || ||||| ||||| || | Sbjct 25243 TTGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTC 25302 Query 152717 G-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT 152775 | ||| || | | || || || ||||| || || ||||||||||| || ||||||||| Sbjct 25303 GATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 25361 Query 152776 GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTC 152835 ||| || || || || || || | ||||| || |||||||||| || || ||| Sbjct 25362 GTTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTT 25421 Query 152836 GGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTG 152895 || || ||||| || || ||||| |||| || ||||||| || || |||||||| || Sbjct 25422 GGTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTG 25481 Query 152896 AATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATT 152955 || || |||||||||||||| ||||| ||| | ||||| | || |||| | || ||| Sbjct 25482 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATT 25541 Query 152956 CATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAA 153015 ||||||| ||| ||||| |||||||| | | | |||||||| ||||| || ||| Sbjct 25542 CATGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGG 25601 Query 153016 GCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGG 153075 ||||| || ||||||| ||||| || ||||| |||||||| |||||||| || ||| Sbjct 25602 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGG 25661 Query 153076 TCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 153135 ||||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||| Sbjct 25662 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 25721 Query 153136 GTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTT 153195 ||||| || | ||| | |||| | || |||| | | ||||| || | || || Sbjct 25722 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 25781 Query 153196 CGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACG 153255 ||||| || || || || || || |||||| | || | ||||||||||||||||| || Sbjct 25782 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACT 25841 Query 153256 TTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGAC 153315 ||||| || || ||||| || || ||||||||| ||||||||||| |||| || || Sbjct 25842 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 25901 Query 153316 CAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 || |||||||| ||| | | |||||||| ||||| | || || || |||||||| Sbjct 25902 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549516322876800