Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq391 628 3e-175 seq582 553 2e-152 >seq391 Length=7892 Score = 628 bits (696), Expect = 3e-175 Identities = 736/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | |||||| | || | || ||||| ||||| | Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| |||| || || Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTCC 6712 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| ||||| ||| |||| ||||| | || || ||||| Sbjct 6713 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 6772 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || || || ||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 6773 TATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAAT 6832 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 ||||||||| |||||| ||||||||||| | ||||| |||||||||| |||| | || Sbjct 6833 CTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGT 6892 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | |||||| | | || | | |||||||| ||||||||||||||| || ||| Sbjct 6893 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 6952 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | |||||||| || ||||| |||||| || || || || || || || || | ||| Sbjct 6953 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGC 7012 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | |||| || |||||||||| || || |||| ||||||||| || || Sbjct 7013 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7072 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 |||||||||||| |||| |||| |||| |||||||| |||||||| || |||||||| || Sbjct 7073 CTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 7132 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 || |||||| | || || ||||| |||||||| || || | || ||||||||| || Sbjct 7133 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 7192 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATG 157708 | || ||||| | | ||| || | ||||| || |||| || || ||| | | Sbjct 7193 TTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 7251 Query 157709 GTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCG 157768 |||||| ||||||||||| ||||| || || |||||||| ||||| || ||||| || | Sbjct 7252 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTG 7311 Query 157769 GTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCG 157828 |||| ||||||||||||| ||| ||||||||| | | | ||||||||| | | Sbjct 7312 GTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAG 7371 Query 157829 CCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 157888 | || |||||||| |||| || ||||| ||||| |||| | || || ||||| |||| Sbjct 7372 CTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCA 7431 Query 157889 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 157948 |||| |||||||||||||||||||| || | ||||| |||| |||||||| | |||| Sbjct 7432 ACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 7491 Query 157949 CCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158008 ||||||| ||| || | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 7492 CCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 7551 Query 158009 CACACAACTTCCCACTGGATCTTGCTGCT 158037 | || |||||||| || || | |||||| Sbjct 7552 CTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 553 bits (612), Expect = 2e-152 Identities = 734/1013 (72%), Gaps = 6/1013 (1%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | |||| |||||||||||||| || |||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| | || | || |||||| |||| || || || || Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | || |||||||| |||||| | || | ||| ||| | || || ||||| ||||| Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCT 25122 Query 158954 TA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012 || | ||||| ||||| ||||| ||| || | | | || ||| | || | || |||| Sbjct 25123 TAACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGG 25182 Query 159013 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTG 159072 ||||||| || ||||||||||| | ||| ||| | || || || |||| ||| | Sbjct 25183 GTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCG 25242 Query 159073 TGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 159132 | || || || ||||| || || ||||| ||||| ||| | || ||||| ||||| || | Sbjct 25243 TTGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTC 25302 Query 159133 G-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159191 | ||| || | | || || || ||||| || || ||||||||||| |||||||||||| Sbjct 25303 GATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 25361 Query 159192 GTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 159251 || || ||||| || || ||| | |||||||| |||||||||| || || ||| Sbjct 25362 GTTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTT 25421 Query 159252 GGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTA 159311 || || || || ||||| || ||| | || || | |||||||| || || ||||| || Sbjct 25422 GGTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTG 25481 Query 159312 AACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATT 159371 ||||| || ||||||||||||||||| ||| | | || | || || |||| |||||| Sbjct 25482 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATT 25541 Query 159372 CATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 159431 ||||| | || || |||||||| |||| |||||||| || ||||| || || | Sbjct 25542 CATGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGG 25601 Query 159432 GCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 159491 || ||| | ||||||||| || || |||||||| ||||| || || |||||||| ||| Sbjct 25602 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGG 25661 Query 159492 TCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTT 159551 || || ||||| || |||| ||||| || || || ||| | |||||||||||||| ||| Sbjct 25662 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 25721 Query 159552 GTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 159611 || || || | ||| |||||| | |||| | | ||||| || | || || Sbjct 25722 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 25781 Query 159612 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACG 159671 ||||| || || ||||| || || ||| | ||||| |||||||| ||||||||||| Sbjct 25782 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACT 25841 Query 159672 TTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 159731 ||||||||||| || ||||| | || ||||| | ||||||||| |||| || ||| Sbjct 25842 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 25901 Query 159732 CAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 || || ||||||||| | || ||||| || || |||||||| | || ||||| Sbjct 25902 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 25954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545168362195200