Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq391 589 6e-164 >seq391 Length=7892 Score = 589 bits (652), Expect = 6e-164 Identities = 710/956 (74%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| | || |||||||| ||||||| || | || ||| || | Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAAC 6679 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || ||||| || ||||| ||||| || |||||||| || || || Sbjct 6680 TTCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || || ||||| |||||||| || || ||||| || | |||| | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| |||||||| |||||||| ||| ||||||| Sbjct 6800 TTCTGCA--GCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAG 6857 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | ||||| || || || | |||| | || | |||||| | |||| | | Sbjct 6858 TGGTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCT 6917 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 6918 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 6977 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || |||||||||||||| || |||| || ||||| | ||||||| | || Sbjct 6978 GTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGT-TTTCTTGATCTACCCAATCGG 7036 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || ||||| || |||| ||||||| | || ||||| ||||| ||||||| ||| | Sbjct 7037 TCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 7096 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || |||||| | ||||| ||||| Sbjct 7097 CGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 7156 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || ||||| ||||| ||||| ||||| |||| || | || | ||| Sbjct 7157 TGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 7215 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | ||| | ||||||| || || ||||| |||| Sbjct 7216 TCAGGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAG 7275 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || |||||||||||||| ||||||||||| ||||| || |||||||||||||| ||| Sbjct 7276 AAACTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTA 7335 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 ||||||||| |||||| ||||||||||| | ||||| ||||| || | || |||| Sbjct 7336 GTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTT 7395 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 |||| |||| ||||| || ||| ||||| || || || |||||||||||||| |||| Sbjct 7396 GGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACC 7455 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | |||||||| ||| | || |||||||| || | || |||| Sbjct 7456 AATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTG 7515 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 |||| || || | || || ||||||||||| ||||||||||||||||| || ||| Sbjct 7516 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 7571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148801512239520