Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq391 621 1e-173 >seq391 Length=7892 Score = 621 bits (688), Expect = 1e-173 Identities = 740/992 (75%), Gaps = 14/992 (1%) Strand=Plus/Plus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||| ||||| ||||||| || || ||||||||||| ||||| |||||||| | Sbjct 6593 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 6652 Query 18783 GATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCA 18840 |||||| || | || ||| | || ||| | ||| || ||||| |||||||| ||||| Sbjct 6653 GATGATCCC-TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCT 6710 Query 18841 CCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAAC 18900 ||||| ||||| |||||||| || || || |||||| | || ||| ||||| |||||| Sbjct 6711 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAC 6770 Query 18901 AACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACC 18958 || || || ||||| || | |||| | | ||| || || || | ||||| |||| Sbjct 6771 AATATTATTTCGGGTGCTATTATTCCTACTTCTGCA--GCTATTGGGTTGCACTTTTACC 6828 Query 18959 CAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTG 19018 |||| |||||||| ||| ||||||| ||| | ||||| || || || | |||| Sbjct 6829 CAATCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAA 6888 Query 19019 TGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078 | || | |||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 6889 TCGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTT 6948 Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138 || || || ||||| ||||||||| |||||| || |||||||| ||||| || || Sbjct 6949 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTA 7008 Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 |||| || ||| | |||| ||| | |||||||| |||| || | ||||||| | | Sbjct 7009 CTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAG 7068 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | || |||||| ||||||| ||| | |||||||||||||| || |||||||| |||| Sbjct 7069 GAATCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGC 7128 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 |||| || |||||| | ||||| |||||||| |||||||| || ||||||||||| |||| Sbjct 7129 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 7188 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAAC 19377 | ||||| |||| || | || | ||| | | ||||| || ||| | | |||| ||| Sbjct 7189 ATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAC 7247 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | || |||| || || ||||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 7248 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTAT 7307 Query 19438 TTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTT 19497 |||||||| | || ||||| || || |||||||| |||||| |||| ||||| Sbjct 7308 TTTGGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTC 7367 Query 19498 TTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTA--AGCACCATGG 19555 || |||||||||||||| | || ||||||||| | | ||| ||||| || || |||| Sbjct 7368 TTAGCTGCTTGGCCTGTAATCGGTATTTGGTTTACTG--CTTTGGGTATTAGTACTATGG 7425 Query 19556 CATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCA 19615 | |||||| | || || || ||||| ||||| || | |||| | | |||||||| | Sbjct 7426 CTTTCAACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAA 7485 Query 19616 TTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAAC 19675 || | || |||||||| || | || ||||||||||| || | || || ||||| |||| Sbjct 7486 TTAACACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 7545 Query 19676 GTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||||||||||||||||| || || || ||| Sbjct 7546 GTAATGCTCATAACTTCCCTCTAGACTTAGCT 7577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141122920367520